Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C24
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protei...    28   8.4  
AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen prot...    28   8.4  

>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 24/87 (27%), Positives = 26/87 (29%)
 Frame = +2

Query: 608 PXAGGGXXAPPPXXGPXKXTLXXXGAKPGQEL*KXRXFPLXETPPAPXXTXPXAXPENXG 787
           P    G    P   GP   +     A PG         P    PP P    P A P   G
Sbjct: 197 PAGNDGAAGTPGPDGPAGESTYPEPAAPGPA-----GPPGPAGPPGPDGASPTAAPGAAG 251

Query: 788 GXHPPXKKXXXGXPRESPXRXXPPXXA 868
              PP      G P  +P    PP  A
Sbjct: 252 PPGPPGPAGAPG-PDGNPGTAGPPGKA 277


>U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protein
           43 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 477 GXXGERXPPXPXGEAGYPQESPP*XP 554
           G  GE   P P G+AG P +S P  P
Sbjct: 194 GPPGEAGQPGPQGDAGTPAQSEPLTP 219


>AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen
           protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 477 GXXGERXPPXPXGEAGYPQESPP*XP 554
           G  GE   P P G+AG P +S P  P
Sbjct: 194 GPPGEAGQPGPQGDAGTPAQSEPLTP 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,213,956
Number of Sequences: 27780
Number of extensions: 100476
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)