Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C22
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 126 4e-30
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 126 6e-30
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 31 0.29
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 28 1.6
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 27 3.6
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 26 6.3
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 8.3
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 126 bits (304), Expect = 4e-30
Identities = 62/137 (45%), Positives = 77/137 (56%)
Frame = +3
Query: 408 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 587
AFGNMCR GRMFAPTK WR+WH ARGH IE+IPE+
Sbjct: 91 AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEV 150
Query: 588 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKGVQVSASSCW*G*NAQPSSYQRKGPLII 767
PLVV D VQ KTK+AV L+ +KA+ D++K G QR+GPL++
Sbjct: 151 PLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVV 210
Query: 768 FNKDQGLTRAFRXIPGV 818
FN+D G+ +AFR IPGV
Sbjct: 211 FNEDTGIVKAFRNIPGV 227
Score = 118 bits (284), Expect = 1e-27
Identities = 56/91 (61%), Positives = 69/91 (75%)
Frame = +2
Query: 131 LSVARPLXVGVFREERDGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 310
++ ARP V ++ ++ + FVFKAPIRPDLV VH +++KN RQPY VS++A
Sbjct: 1 MAAARPT-VSIYNKD-GSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKA 58
Query: 311 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 403
GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ
Sbjct: 59 GHQTSAESWGTGRALARIPRVGGGGTHRSGQ 89
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 126 bits (303), Expect = 6e-30
Identities = 62/137 (45%), Positives = 77/137 (56%)
Frame = +3
Query: 408 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 587
AFGNMCR GRMFAPTK WR+WH ARGH IE+IPE+
Sbjct: 91 AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEV 150
Query: 588 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKGVQVSASSCW*G*NAQPSSYQRKGPLII 767
PLVV D VQ KTK+AV L+ +KA+ D++K G QR+GPL++
Sbjct: 151 PLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVV 210
Query: 768 FNKDQGLTRAFRXIPGV 818
FN+D G+ +AFR IPGV
Sbjct: 211 FNEDAGIVKAFRNIPGV 227
Score = 118 bits (284), Expect = 1e-27
Identities = 58/92 (63%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Frame = +2
Query: 131 LSVARPLXVGVFREERDGA-GXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 307
++ ARP V ++ +DG+ + FVFKAPIRPDLV VH +++KN RQPY VS++
Sbjct: 1 MAAARPT-VSIY--SKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57
Query: 308 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 403
AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ
Sbjct: 58 AGHQTSAESWGTGRALARIPRVGGGGTHRSGQ 89
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 30.7 bits (66), Expect = 0.29
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = -2
Query: 790 VRP*SLLKIMRGPLR*YDDGCAFYPYQHEDAETCTPLRISDHALRRLRKMTACLVLLISW 611
+RP L KI R FYP E + CT L +++ + T C +L S
Sbjct: 201 IRPEDLKKIFRS-------SSFFYPILMEHIKRCTSLDLTNSVFSLSKVNTDCAILTSSG 253
Query: 610 TLSATTKGSSGIFSIMCPL 554
L +K + +F ++ L
Sbjct: 254 KLKIFSKAQNIVFDVLLAL 272
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +1
Query: 322 QCRIMGYR--TCCRPNSSCPWWWYP*VRSGXPSVTCVVVDVCSPPRSPGGAGTVASTSDS 495
QC + Y TCC P S C + +G C+ VD+ S A + ST+ S
Sbjct: 75 QCGGINYNGPTCCEPGSEC-------IYNGPYYSQCIPVDIDPSSSSSSAASSTTSTTSS 127
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +3
Query: 603 DKVQEINKTKQAVIFLRRLKAWSDILKGVQVSASSCW*G*NAQPSSYQRKG 755
D V+ K KQ FL + +W D+ + CW P+ ++G
Sbjct: 81 DAVKSTIKCKQCQSFLTSISSWKDLPSANWMEMLDCWSCHTDYPTVLSKRG 131
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -1
Query: 587 KLGNLFNNVSSSLNERWDAGSSNGCCQGRSPLSEVDATVPAPPGLRGGEHTSTTT 423
KLG FNN SS+++E + N CQ S L+ + P R + ST+T
Sbjct: 253 KLGYYFNNTSSTISEEFK--KRNKECQYDSVLNRLTFPTEQYPIWRPEYNFSTST 305
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 247 DQVRTYGRLEHEXGGAWLXPCTVSLFSEYTD 155
D +TY +E E G + T FSEY D
Sbjct: 905 DLAKTYFFIEDEGDGTYKFKLTYGAFSEYLD 935
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,948
Number of Sequences: 5004
Number of extensions: 64416
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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