Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C22
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 108 7e-24
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 105 4e-23
03_05_0366 - 23505755-23506441 34 0.17
08_02_1278 - 25838146-25839411 32 0.53
10_02_0199 + 6668902-6669293,6669825-6669882 31 1.6
06_01_0017 + 189346-189561,189614-189905,190024-190043 31 1.6
07_03_1026 - 23369298-23370326 29 3.8
07_01_0380 - 2834080-2834451,2835945-2836130 29 5.0
03_05_0670 - 26594292-26594785,26595222-26595531 29 5.0
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 29 6.6
03_05_0799 + 27809301-27811550 29 6.6
02_04_0457 + 23093020-23093343,23093798-23093806 28 8.7
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 108 bits (259), Expect = 7e-24
Identities = 48/64 (75%), Positives = 55/64 (85%)
Frame = +2
Query: 215 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 394
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 395 SGQG 406
+GQG
Sbjct: 91 AGQG 94
Score = 105 bits (253), Expect = 4e-23
Identities = 55/138 (39%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Frame = +3
Query: 408 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 587
AFGNMCRGGRMFAPTK WR+WH ARGH IE +PEL
Sbjct: 95 AFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPEL 154
Query: 588 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKGVQVSASSCW*G*NAQPSSYQRKGPLII 767
PLV++D + I KT QA+ L+++ A++D K G RKGPLI+
Sbjct: 155 PLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIV 214
Query: 768 FNKD-QGLTRAFRXIPGV 818
+ + + +AFR +PGV
Sbjct: 215 YGTEGSKIVKAFRNLPGV 232
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 105 bits (253), Expect = 4e-23
Identities = 52/76 (68%), Positives = 58/76 (76%)
Frame = +2
Query: 179 DGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVA 358
D AG Q P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+
Sbjct: 21 DSAGIQ-MPQ--VLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVS 77
Query: 359 RIPRVRGGGTHRSGQG 406
RIPRV GGGTHR+GQG
Sbjct: 78 RIPRVPGGGTHRAGQG 93
Score = 105 bits (253), Expect = 4e-23
Identities = 56/138 (40%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Frame = +3
Query: 408 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 587
AFGNMCRGGRMFAPTK WRRWH ARGH IE +PE
Sbjct: 94 AFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPEF 153
Query: 588 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKGVQVSASSCW*G*NAQPSSYQRKGPLII 767
PLVV+D ++ I KT Q++ L+++ A++D K A G RKGPLI+
Sbjct: 154 PLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIV 213
Query: 768 FNKD-QGLTRAFRXIPGV 818
+ + + +AFR +PGV
Sbjct: 214 YGTEGSKVVKAFRNLPGV 231
>03_05_0366 - 23505755-23506441
Length = 228
Score = 33.9 bits (74), Expect = 0.17
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +2
Query: 167 REERDGAGXQPSP---SRFVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAES 334
R+ + G+G + P ++ AP D +V S + R P C S E + +AES
Sbjct: 90 RQRQGGSGWERHPWPHDSWIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAES 149
Query: 335 WGTGRAVARIPRVRGGGTH 391
TG A R R+ G T+
Sbjct: 150 GATGLAHTRAGRIHAGPTN 168
>08_02_1278 - 25838146-25839411
Length = 421
Score = 32.3 bits (70), Expect = 0.53
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -1
Query: 656 APQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVSSSL 549
A +E LF L+D+LD V+ +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 326 AESWGTGRAVARIPRVRGGGTHR 394
A+SW TGRA A + R R GG R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRR 58
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -1
Query: 650 QEDDS--LFGLVDLLDFVSYNQGKLGNLFNNVSSSLNERWDAGSSNGCCQGR--SPLSEV 483
+EDD L G ++ F + + N+ +S L+ +WDAGS + SPLS V
Sbjct: 75 KEDDKYVLHGWQKVMSFQARDSSN-SKAGNDSTSKLSFKWDAGSCSSASSSAMYSPLSAV 133
Query: 482 DATVPAP 462
A AP
Sbjct: 134 SAPAKAP 140
>07_03_1026 - 23369298-23370326
Length = 342
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -1
Query: 536 DAGSSNGCCQGRS-PLSEVDATVPAPPGLRGGEHTSTTTHVTEGXPDRT 393
DA S+ GC + RS P+ AT PA R + T H D T
Sbjct: 190 DAESAQGCARTRSPPVRSARATTPAASPSRSKKETPVRAHAAVRGDDAT 238
>07_01_0380 - 2834080-2834451,2835945-2836130
Length = 185
Score = 29.1 bits (62), Expect = 5.0
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Frame = +2
Query: 314 HQ-TSAESWGTGRAVARIPRVRGGGTHRSGQGCLR*HVSWWTYVRPH---EALAALAPSR 481
HQ S+ G A AR V G + SG G V P +A AA AP+
Sbjct: 92 HQGESSSGGGVSTAAARHCDVAGSSSSHSGSGSGSATPPRPALVSPRAGLQAAAAAAPTM 151
Query: 482 QPPTAESGLGSSRCCYR 532
P A SGL R R
Sbjct: 152 NQPPAASGLSMKRSLQR 168
>03_05_0670 - 26594292-26594785,26595222-26595531
Length = 267
Score = 29.1 bits (62), Expect = 5.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 371 VRGGGTHRSGQGCLR*HVSWWTYVRPHEALAALAPSRQPPTAESGLGSSRCCYRRPSAR 547
V GGG G G R W +RP +LAA+ P+ P E G + RR +R
Sbjct: 10 VSGGG---GGSGLTR---RWRRQIRPPRSLAAVDPAPSSPRGERRQGEEKADRRRLRSR 62
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 316 VTSLLAHAVRLPRVLGHRNVNIIDQVRTYGRLEHEXGGAWLXP 188
+TS+ H RL L R++ + +R YG HE G A+ P
Sbjct: 343 LTSVAGHYGRLDGDLVVRSLTFVSNMRAYGPFGHEDGVAFDLP 385
>03_05_0799 + 27809301-27811550
Length = 749
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +1
Query: 403 GXPSVTCVVVDVCSPPRSPGGAGTVASTSDSGERPWQQP----LLLPASQ-RSFRLEDTL 567
G PS V+ +PP SP G G S WQQP L LP S +S RL +L
Sbjct: 400 GSPSSVSAVMSPFTPPMSPSGNGMPPSLG------WQQPNVPTLHLPGSSLQSSRLRTSL 453
Query: 568 LKR 576
R
Sbjct: 454 SAR 456
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 311 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQG 406
G + S W G A A VRGGG RSG G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGG 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,481,632
Number of Sequences: 37544
Number of extensions: 550486
Number of successful extensions: 1633
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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