Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C22
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   118   4e-27

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  118 bits (285), Expect = 4e-27
 Identities = 59/137 (43%), Positives = 76/137 (55%)
 Frame = +3

Query: 408 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 587
           AFGNMCRGG MFAP K +RRWH                         QARGH+I+++ E+
Sbjct: 90  AFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEV 149

Query: 588 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKGVQVSASSCW*G*NAQPSSYQRKGPLII 767
           PLVV+DKV+   KTK+AV+FLRR   W+DI K      +    G        Q+ GP++I
Sbjct: 150 PLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVI 209

Query: 768 FNKDQGLTRAFRXIPGV 818
           + +D    RAFR IPGV
Sbjct: 210 YGQDAECARAFRNIPGV 226



 Score = 97.9 bits (233), Expect = 9e-21
 Identities = 52/89 (58%), Positives = 63/89 (70%)
 Frame = +2

Query: 140 ARPLXVGVFREERDGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 319
           ARPL V V+ E+ +    Q      VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q
Sbjct: 3   ARPL-VTVYDEKYEATQSQIRLPA-VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60

Query: 320 TSAESWGTGRAVARIPRVRGGGTHRSGQG 406
            SAESWGTGRAVARIPRVRGGGTHRSGQG
Sbjct: 61  HSAESWGTGRAVARIPRVRGGGTHRSGQG 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,933,983
Number of Sequences: 27780
Number of extensions: 399969
Number of successful extensions: 1028
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)