Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C22
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    27   0.23 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   8.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 488 EVDATVPAPPGLRGGEHTSTTTHVT 414
           ++D  +P PP +RGGE T  T   T
Sbjct: 370 DLDEPLPPPPPIRGGEWTFDTLRKT 394


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 479 ATVPAPPGLRGGEHTSTTTHVTEG 408
           A+V A PG  G   TST T +  G
Sbjct: 170 ASVKAEPGSTGTTTTSTGTRLLHG 193



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 442 SPPRSPGGAGT 474
           SPPR PGG  T
Sbjct: 397 SPPRGPGGVPT 407


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 683 FKDIRPCLEAPQEDDSLFG 627
           F++  P L  P  DD LFG
Sbjct: 471 FEEPLPSLPLPGADDDLFG 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,466
Number of Sequences: 438
Number of extensions: 4647
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)