Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C22
(890 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 112 3e-25
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 111 6e-25
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 4.1
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 4.1
At1g80080.1 68414.m09374 leucine-rich repeat family protein cont... 29 4.1
At5g13950.1 68418.m01631 expressed protein 28 7.2
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 28 7.2
At5g14650.1 68418.m01716 polygalacturonase, putative / pectinase... 28 9.6
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 112 bits (270), Expect = 3e-25
Identities = 58/95 (61%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Frame = +2
Query: 125 MSLSVARPLXVGVFREERDGAGXQPSPSRF--VFKAPIRPDLVNDVHVSMSKNSRQPYCV 298
M+ + ARPL V + + D + Q S V AP+RPD+VN VH +S NSRQPY V
Sbjct: 1 MAAAAARPL-VTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAV 59
Query: 299 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 403
SK+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ
Sbjct: 60 SKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ 94
Score = 103 bits (246), Expect = 2e-22
Identities = 53/138 (38%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Frame = +3
Query: 408 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 587
AFGNMCRGGRMFAPTK WRRWH ARGH IE +PE+
Sbjct: 96 AFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEM 155
Query: 588 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKGVQVSASSCW*G*NAQPSSYQRKGPLII 767
PLVV+D + + KT A+ L+++ A+ D K G RKGPL++
Sbjct: 156 PLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVV 215
Query: 768 FNKD-QGLTRAFRXIPGV 818
+ + + +AFR +PGV
Sbjct: 216 YGTEGSKIVKAFRNLPGV 233
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 111 bits (267), Expect = 6e-25
Identities = 49/63 (77%), Positives = 55/63 (87%)
Frame = +2
Query: 215 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 394
V AP+RPD+VN VH +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHR 92
Query: 395 SGQ 403
+GQ
Sbjct: 93 AGQ 95
Score = 104 bits (249), Expect = 9e-23
Identities = 54/138 (39%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Frame = +3
Query: 408 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 587
AFGNMCRGGRMFAPTK WRRWH ARGH IE +PE+
Sbjct: 97 AFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEM 156
Query: 588 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKGVQVSASSCW*G*NAQPSSYQRKGPLII 767
PLVV+D + + KT A+ L+++ A+ D K G RKGPL++
Sbjct: 157 PLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVV 216
Query: 768 FNKDQG-LTRAFRXIPGV 818
F + + +AFR +PGV
Sbjct: 217 FGTEGAKIVKAFRNLPGV 234
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 428 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 526
WW +V LA+ APS P + L SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 428 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 526
WW +V LA+ APS P + L SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496
>At1g80080.1 68414.m09374 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 496
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -1
Query: 683 FKDIRPCLEAPQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVSSSLNERWDAGSSNGCCQG 504
F+D++ E D+SL G V + + L+NN +N D + G G
Sbjct: 371 FRDVKHLSELRLNDNSLTGPVPFERDTVWRMRRKLRLYNNAGLCVNRDSDLDDAFGSKSG 430
Query: 503 RS-PLSEVDATVPAPPG 456
+ L + + + PAP G
Sbjct: 431 STVRLCDAETSRPAPSG 447
>At5g13950.1 68418.m01631 expressed protein
Length = 939
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 149 KVGLPIDSFRYFSEAIPPKYTLIAVIKTIRHAT-EVSNLKDSL 24
+VGL R F + +PP+ ++A + + H T ++ NL + L
Sbjct: 61 QVGLSFRHLREFVDVVPPRRNVLAQVCPVPHETFQLENLSEVL 103
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 634 CLVLLISWTLSATTKGSSGIFS 569
CLVLL+S +A TK SGIF+
Sbjct: 9 CLVLLVSILRAAVTKPDSGIFT 30
>At5g14650.1 68418.m01716 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase PG1 GP|5669846,
PG2 GI:5669848 from [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 435
Score = 27.9 bits (59), Expect = 9.6
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Frame = +2
Query: 320 TSAESWGTGRAVARIPRVRGGGTHRSGQGCLR*HVS-WWTYVRPHEALAALAPSRQPPTA 496
TSA +WG+G + I G G+G + S WW ++ + P R PTA
Sbjct: 121 TSASAWGSG-LLQWIEFKALQGITIKGKGIIDGRGSVWW-----NDMMGTKMP-RTKPTA 173
Query: 497 ESGLGSSRCCYRRPSARSG*RTHY*KDSRASLGCS*---QSPGDQQDQTGCHLPEAPQGM 667
GS+ + ++ +TH D+ S+ S SPGD + G HL + +
Sbjct: 174 LRFYGSNGVTVSGITIQNSPQTHLKFDNCISIQVSDFTTSSPGDSPNTDGIHLQNSQDAV 233
Query: 668 V 670
+
Sbjct: 234 I 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,234,815
Number of Sequences: 28952
Number of extensions: 379856
Number of successful extensions: 991
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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