Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C21
(908 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 170 2e-42
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 5e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 8e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 2e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 52 9e-07
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 42 5e-04
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 37 0.020
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.026
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 34 0.14
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 34 0.14
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 33 0.24
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.42
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 3.0
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 170 bits (413), Expect = 2e-42
Identities = 72/157 (45%), Positives = 112/157 (71%)
Frame = +1
Query: 187 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 366
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 367 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 546
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 547 IVGXNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 657
++ NKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (310), Expect = 5e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +1
Query: 247 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 426
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 111 bits (267), Expect = 8e-25
Identities = 50/84 (59%), Positives = 64/84 (76%)
Frame = +1
Query: 319 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 498
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 499 TREHALLAFTLGVKQLIVGXNKMD 570
TREHA+L +LGV QLIV NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 2e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 249
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 51.6 bits (118), Expect = 9e-07
Identities = 29/110 (26%), Positives = 52/110 (47%)
Frame = +1
Query: 136 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 315
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 316 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 465
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 42.3 bits (95), Expect = 5e-04
Identities = 30/117 (25%), Positives = 52/117 (44%)
Frame = +1
Query: 286 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 465
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 466 EFEAGISKNGQTREHALLAFTLGVKQLIVGXNKMDSTEPPYSEPRFEEIKKEVSSYI 636
QT EH + +K +++ NK+D + ++ ++++I K V I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 37.1 bits (82), Expect = 0.020
Identities = 31/95 (32%), Positives = 42/95 (44%)
Frame = +1
Query: 37 DLILVGVYLGYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT 216
D ++ V G Y + + D E+ N ++ HVD GKST L+ G I K +
Sbjct: 1915 DPVIKAVMFGIYVEQTL-DLSDYPLERVR-NFSIVAHVDHGKSTLADRLLEVTGTISKSS 1972
Query: 217 IEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 321
K VLDKL+ ERERGIT+
Sbjct: 1973 DNK----------------QVLDKLQVERERGITV 1991
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 37.1 bits (82), Expect = 0.020
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 276
M K+ N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 277 VLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 453
L E I K + + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 454 AGTG 465
+G
Sbjct: 132 CVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 36.7 bits (81), Expect = 0.026
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Frame = +1
Query: 118 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 285
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 286 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 459
E A E S +T ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 460 TG 465
G
Sbjct: 231 AG 232
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 34.3 bits (75), Expect = 0.14
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
Frame = +1
Query: 100 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 273
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 274 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 453
+ + L R G D+ +T++D PGH IK +I G A +I
Sbjct: 88 -LPEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGE 128
Query: 454 AGTGEFEAGISKNGQTR 504
GT E G ++G+ +
Sbjct: 129 CGT--IEGGFGQSGKVK 143
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 34.3 bits (75), Expect = 0.14
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Frame = +1
Query: 124 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 276
+ + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 277 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 417
+ + G +D A E+SK +T ID GH ++K I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 33.5 bits (73), Expect = 0.24
Identities = 29/107 (27%), Positives = 44/107 (41%)
Frame = +1
Query: 310 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 489
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 490 NGQTREHALLAFTLGVKQLIVGXNKMDSTEPPYSEPRFEEIKKEVSS 630
QT+E A GV +I NK+D P + P + IK ++S+
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKIDK---PNANP--DNIKTQLST 216
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.42
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 361 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 465
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 367 IIDAPGHRDFIKNMITGTSQADCAVLIV 450
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.3 bits (60), Expect = 9.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 312 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 172
TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 28.3 bits (60), Expect = 9.1
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 442 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGXNKMDSTEPPYSEPRFEEIKK 618
++VAA EF A ++KNG ++ F G + QL +G + M+ TE P P FE++K
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424
Query: 619 EVSS 630
S
Sbjct: 425 RTVS 428
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 9.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 571 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 711
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,563,493
Number of Sequences: 59808
Number of extensions: 550676
Number of successful extensions: 1375
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -