Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C20
         (1146 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    40   9e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.098
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.40 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.52 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    24   1.8  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   2.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 39.5 bits (88), Expect = 9e-04
 Identities = 26/72 (36%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
 Frame = -1

Query: 1047 GGXGGGXXGGXGXPPXG-RXFXSXXXXGXXXXXGGXRGGXXGGGXXXXAPGXPRXXXXXX 871
            GG  GG  GG G PP G   F      G      G  GG  GGG      G         
Sbjct: 187  GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG-FGGGPGGFEGGPGGFGGGPG 245

Query: 870  XXAGGXGGXGGG 835
               GG GG GGG
Sbjct: 246  GFGGGLGGFGGG 257



 Score = 30.3 bits (65), Expect = 0.52
 Identities = 25/72 (34%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
 Frame = -1

Query: 1047 GGXGG-GXXGGXGXPPXGRXFXSXXXXGXXXXXGGXRGGXXG-GGXXXXAPGXPRXXXXX 874
            GG GG G  GG G    G         G     GG  GG  G GG      G P      
Sbjct: 205  GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP------ 258

Query: 873  XXXAGGXGGXGG 838
                GG GG GG
Sbjct: 259  GGFGGGPGGHGG 270



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 18/50 (36%), Positives = 18/50 (36%)
 Frame = -1

Query: 1047 GGXGGGXXGGXGXPPXGRXFXSXXXXGXXXXXGGXRGGXXGGGXXXXAPG 898
            GG GGG  G  G P  G         G     GG  GG  GG      PG
Sbjct: 224  GGFGGGPGGFEGGP-GGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.098
 Identities = 28/94 (29%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
 Frame = +1

Query: 748  PXPPPPPXPPAXXXXXXXXXGXXXXXWXXPPPXPPX--PXXXXXXXXXXSGXXXXXPPXX 921
            P PPPPP   A         G        PPP PP   P          S      PP  
Sbjct: 337  PPPPPPPRSNAAGSIPLPPQGRSA-----PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391

Query: 922  PPXXPXAXXPXXXXAXPP---XXXXKXPPXXXPP 1014
            PP  P    P    A PP         PP   PP
Sbjct: 392  PPAIPGRSAP----ALPPLGNASRTSTPPVPTPP 421



 Score = 32.3 bits (70), Expect = 0.13
 Identities = 22/91 (24%), Positives = 23/91 (25%)
 Frame = +1

Query: 655 PXPXXPRXXXXXXPPPPXXXXXXXXXXXXXXPXPPPPPXPPAXXXXXXXXXGXXXXXWXX 834
           P    P       PP P                 PPPP PP+         G        
Sbjct: 277 PVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSL 336

Query: 835 PPPXPPXPXXXXXXXXXXSGXXXXXPPXXPP 927
           PPP PP P                 PP  PP
Sbjct: 337 PPP-PPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 31.9 bits (69), Expect = 0.17
 Identities = 20/75 (26%), Positives = 21/75 (28%)
 Frame = +2

Query: 746 PPXPXPPXXRPPXXXXXXXXXGXXXXSGXXPPPXPPXPPAXXXXXXXXRGXPGAXXXXPP 925
           PP P PP   P                G   P  PP PP+         G P A    P 
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGA--PAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472

Query: 926 PXXPPRXPPXXXXXP 970
              PP  P      P
Sbjct: 473 APAPPPAPAPAPAAP 487



 Score = 29.9 bits (64), Expect = 0.69
 Identities = 22/75 (29%), Positives = 23/75 (30%)
 Frame = +3

Query: 747 PPXPXPPXXARRXXXXXXXXXXXXXXLGXPPPXPPPXXXXGXXXXXXXGAXXXPPXXXPP 926
           PP P PP  +RR                 PPP PP     G       G         PP
Sbjct: 311 PPPPPPP--SRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG------RSAPP 362

Query: 927 PPPXRXXPXPXXXXP 971
           PPP R  P      P
Sbjct: 363 PPPPRSAPSTGRQPP 377



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 842 PXPPXPPAXXXXXXXXRGXPGAXXXXPPPXXPPR 943
           P PP PP+         G   +    PPP  PPR
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR 344


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 20/63 (31%), Positives = 21/63 (33%)
 Frame = +3

Query: 747 PPXPXPPXXARRXXXXXXXXXXXXXXLGXPPPXPPPXXXXGXXXXXXXGAXXXPPXXXPP 926
           PP P P                    +G PPP PPP    G        A   PP   PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG--------AGPPPP---PP 780

Query: 927 PPP 935
           PPP
Sbjct: 781 PPP 783



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +2

Query: 749 PXPXPPXXRPPXXXXXXXXXGXXXXSGXXPPPXPPXPPA 865
           P P P     P              +G  PPP PP PPA
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +1

Query: 655 PXPXXPRXXXXXXPPPPXXXXXXXXXXXXXXPXPPPPPXPPA 780
           P P  P       PPPP                PPPPP PPA
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAG-----PPPPPPPPPA 784



 Score = 26.2 bits (55), Expect = 8.5
 Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
 Frame = +1

Query: 694 PPPPXXXXXXXXXXXXXXPXPPPPP----XPPAXXXXXXXXXGXXXXXWXXPPPXPPXP 858
           PPPP              P PPP P     PP          G        PPP PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG-------PPPPPPPPP 783


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 305

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 21/65 (32%), Positives = 22/65 (33%)
 Frame = -1

Query: 1032 GXXGGXGXPPXGRXFXSXXXXGXXXXXGGXRGGXXGGGXXXXAPGXPRXXXXXXXXAGGX 853
            G  GG G    GR   +    G     GG RGG  GGG      G            G  
Sbjct: 6    GSRGGRGGSRGGRGGFNGGRGGF----GGGRGGARGGGRGGARGGRGGRGGARGGRGGSS 61

Query: 852  GGXGG 838
            GG GG
Sbjct: 62   GGRGG 66



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 22/72 (30%), Positives = 23/72 (31%)
 Frame = -1

Query: 1050 RGGXGGGXXGGXGXPPXGRXFXSXXXXGXXXXXGGXRGGXXGGGXXXXAPGXPRXXXXXX 871
            RGG GG   G  G       F            GG RGG  G G      G         
Sbjct: 8    RGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG--------- 58

Query: 870  XXAGGXGGXGGG 835
              +GG GG  GG
Sbjct: 59   GSSGGRGGAKGG 70



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
 Frame = -1

Query: 1050 RGGXGGG----XXGGXGXPPXGRXFXSXXXXGXXXXXGGXRGGXXGGGXXXXAP 901
            RGG GGG      GG G    GR        G     GG RGG  GG      P
Sbjct: 25   RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG-RGGAKGGAKVIIEP 77


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 21/91 (23%), Positives = 22/91 (24%)
 Frame = +3

Query: 729  PXXXXXPPXPXPPXXARRXXXXXXXXXXXXXXLGXPPPXPPPXXXXGXXXXXXXGAXXXP 908
            P     PP P P   A                    PP PPP            G    P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP-PVPKPSVGVPPVP 1211

Query: 909  PXXXPPPPPXRXXPXPXXXXPXXXXXXXPSP 1001
            P    PP P      P    P       P+P
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/69 (24%), Positives = 17/69 (24%)
 Frame = +2

Query: 746  PPXPXPPXXRPPXXXXXXXXXGXXXXSGXXPPPXPPXPPAXXXXXXXXRGXPGAXXXXPP 925
            PP P P    PP              SG  P P P                P      PP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151

Query: 926  PXXPPRXPP 952
               P   PP
Sbjct: 1152 VPAPSGAPP 1160


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect(2) = 1.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 754 PPPPPXPPA 780
           PPPPP PP+
Sbjct: 307 PPPPPPPPS 315



 Score = 23.0 bits (47), Expect(2) = 1.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 748 PXPPPPPXP 774
           P PPPPP P
Sbjct: 306 PPPPPPPPP 314


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
            protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -1

Query: 1050 RGGXGGGXXGGXGXPPXGRXFXSXXXXGXXXXXGGXRGGXXG 925
            RGG GG   GG G    G               GG RGG  G
Sbjct: 151  RGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,642
Number of Sequences: 5004
Number of extensions: 26249
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 611599874
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)