Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C20
         (1146 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.41 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.41
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +2

Query: 851 PXPPAXXXXXXXXRGXPGAXXXXPPPXXPPRXPP 952
           P P          RG P      PPP  PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 754  PPPPPXPPA 780
            PPPPP PP+
Sbjct: 1355 PPPPPPPPS 1363


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 891 GAXXXPPXXXPPPPP 935
           G    PP   PPPPP
Sbjct: 333 GDSDTPPKPAPPPPP 347



 Score = 23.0 bits (47), Expect = 5.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 748 PXPPPPPXPPA 780
           P P PPP PP+
Sbjct: 339 PKPAPPPPPPS 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,641
Number of Sequences: 438
Number of extensions: 6272
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38801322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)