Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C19
(939 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 35 0.019
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.058
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.058
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.8
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.7
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 34.7 bits (76), Expect = 0.019
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -3
Query: 625 PXXXPPPPPXGGGXFXXXXXXPPPPPXPXXKKKK 524
P PPPPP G F PPPPP KK+K
Sbjct: 5 PPGNPPPPPPPPG-FEPPSQPPPPPPPGYVKKRK 37
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 497 PPXXGGPXXPPPPPFXXXXPFXPPP 423
PP G P PPPPP P PPP
Sbjct: 5 PP--GNPPPPPPPP-GFEPPSQPPP 26
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.058
Identities = 22/92 (23%), Positives = 25/92 (27%), Gaps = 2/92 (2%)
Frame = -3
Query: 724 PXPPPXGGXXXPPPXXXXXXXXXXXXGXX--GGXXPXXXPPPPPXGGGXFXXXXXXPPPP 551
P PPP G PP P PP PPPP
Sbjct: 255 PIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPP 314
Query: 550 PXPXXKKKKXXXGXXXFXPPXXGAXXXPPPPP 455
P P + + G + PPPPP
Sbjct: 315 PPPSRRNR----GKPPIGNGSSNSSLPPPPPP 342
Score = 29.5 bits (63), Expect = 0.72
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Frame = -3
Query: 625 PXXXPPP-------PPXGGGXFXXXXXXPPPPPXPXXKKKKXXXGXXXFXPPXXGAXXXP 467
P PPP PP G G PPPPP + G P G P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP------RSNAAGSIPL--PPQGRSAPP 362
Query: 466 PPPP 455
PPPP
Sbjct: 363 PPPP 366
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.058
Identities = 20/70 (28%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Frame = -3
Query: 748 PPPXXXGXPXPPPXGGXXXPP-PXXXXXXXXXXXXGXXGGXXPXXXPPPPPXGGGXFXXX 572
PPP P P P PP P G G P PPPP G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793
Query: 571 XXXPPPPPXP 542
P P P
Sbjct: 794 APAPQAEPEP 803
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -3
Query: 613 PPPPPXGGGXFXXXXXXPPPPPXPXXKKKKXXXGXXXFXPPXXGAXXXPPPPP 455
PPPPP P P P P G PP A PPPPP
Sbjct: 732 PPPPPPA-----VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 29.9 bits (64), Expect = 0.54
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 494 PXXGGPXXPPPPPFXXXXPFXPPP 423
P GGP PPPPP PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Frame = -1
Query: 513 GXXXXPPPXG----GPXXPPPPP 457
G PPP G GP PPPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.8
Identities = 23/100 (23%), Positives = 23/100 (23%), Gaps = 2/100 (2%)
Frame = -3
Query: 748 PPPXXXGXPXPPPXGGXXXPPPXXXXXXXXXXXXGXXGGXXP--XXXPPPPPXGGGXFXX 575
P P P P P G P P G P P PPP
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202
Query: 574 XXXXPPPPPXPXXKKKKXXXGXXXFXPPXXGAXXXPPPPP 455
PP P P P A P P P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/96 (20%), Positives = 22/96 (22%)
Frame = -3
Query: 748 PPPXXXGXPXPPPXGGXXXPPPXXXXXXXXXXXXGXXGGXXPXXXPPPPPXGGGXFXXXX 569
P P P P P G PP G P PP P G
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPV 1231
Query: 568 XXPPPPPXPXXKKKKXXXGXXXFXPPXXGAXXXPPP 461
PP P + P + P P
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSP 1267
Score = 25.8 bits (54), Expect = 8.8
Identities = 20/97 (20%), Positives = 21/97 (21%)
Frame = -3
Query: 748 PPPXXXGXPXPPPXGGXXXPPPXXXXXXXXXXXXGXXGGXXPXXXPPPPPXGGGXFXXXX 569
P P P P P G P P PP P G
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183
Query: 568 XXPPPPPXPXXKKKKXXXGXXXFXPPXXGAXXXPPPP 458
PP P + PP PP P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 5.0
Identities = 22/74 (29%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Frame = +3
Query: 531 FFXXGXGGGG-GXXXXXKXXPPPXGGGGGXXXGXXPPXXPXXXXXXXXXXXXGGGXXXPP 707
F G GGG G PPP GG G G G G
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGF---GGEGHHHGGHGGFGGGPGGFEGG 236
Query: 708 XGGGXGXPXXXGGG 749
GG G P GGG
Sbjct: 237 PGGFGGGPGGFGGG 250
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 427 GGKXGFXXXKGGGGGXXGPPXXGG 498
GG+ GF +GG GG G GG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGG 39
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -2
Query: 497 PPXXGGPXXPPPPPFXXXXPFXPP 426
PP P PPPP P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP 1722
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -2
Query: 497 PPXXGGPXXPPPPPFXXXXPFXPPP 423
PP P P PP P PPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPP 1733
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,429
Number of Sequences: 5004
Number of extensions: 25585
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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