Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C19
         (939 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    33   0.009
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    30   0.088
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            29   0.27 
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   3.3  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    25   3.3  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    24   7.6  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 33.5 bits (73), Expect = 0.009
 Identities = 20/63 (31%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
 Frame = -3

Query: 724 PXPPPXGGXXXPPPXXXXXXXXXXXXGXXGGXXPXXXPPPPPXGGGXFXXXXXXPPP--P 551
           P PP  GG    PP            G   G  P   P PP   G         PPP  P
Sbjct: 209 PQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPMMGQPPPIRP 268

Query: 550 PXP 542
           P P
Sbjct: 269 PNP 271


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 30.3 bits (65), Expect = 0.088
 Identities = 19/57 (33%), Positives = 20/57 (35%)
 Frame = +3

Query: 456 GGGGGXXXAPXXGGXKXXXPXXXFFFFXXGXGGGGGXXXXXKXXPPPXGGGGGXXXG 626
           GGGG    AP  GG     P         G GGGGG     +       GGG    G
Sbjct: 203 GGGGSGGGAPGGGGGSSGGPGPG------GGGGGGGRDRDHRDRDREREGGGNGGGG 253



 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 424 GGGKXGFXXXKGGGGGXXGPPXXGG 498
           GGG  G     GGGG   GP   GG
Sbjct: 203 GGGGSGGGAPGGGGGSSGGPGPGGG 227



 Score = 25.8 bits (54), Expect = 1.9
 Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
 Frame = +3

Query: 456 GGGGGXXXAPXXGGXKXXXPXXXFFFFXXGXGGGG------GXXXXXKXXPPPXGGGGG 614
           GGGGG          +             G GGGG      G        P P GGGGG
Sbjct: 172 GGGGGGGAGSFAAALRNLAKQADVKEDEPGAGGGGSGGGAPGGGGGSSGGPGPGGGGGG 230



 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 680 GGXGXXXPPXGGGXXXXXXXGGGXXXG 760
           GG G   P  GGG       GGG   G
Sbjct: 205 GGSGGGAPGGGGGSSGGPGPGGGGGGG 231


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 625 PXXXPPPPPXGGGXFXXXXXXPPPP 551
           P   PPPPP GG          PPP
Sbjct: 527 PLGPPPPPPPGGAVLNIPPQFLPPP 551



 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 486 GGPXXPPPPPLXXXKXXFXPP 424
           GGP  PPPPP         PP
Sbjct: 525 GGPLGPPPPPPPGGAVLNIPP 545



 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -3

Query: 625 PXXXPPPPPXGGGXFXXXXXXPPPPP 548
           P   PPP P  GG         PP P
Sbjct: 589 PPMGPPPSPLAGGPLGGPAGSRPPLP 614



 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 613 PPPPPXGGGXFXXXXXXPPPPP 548
           PPPPP  GG          PPP
Sbjct: 530 PPPPPPPGGAVLNIPPQFLPPP 551


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 424 GGGKXGFXXXKGGGGGXXGPPXXGG 498
           G G+ G     GGGGG  G    GG
Sbjct: 549 GAGRGGVGSGIGGGGGGGGGGRAGG 573


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 543 GXGGGGGXXXXXKXXPPPXGGGGG 614
           G GGGGG            GGGGG
Sbjct: 658 GGGGGGGSVGSGGIGSSSLGGGGG 681


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 497 PPXXGGPXXPPPPPFXXXXPFXPP 426
           PP   GP  P PPP     P  PP
Sbjct: 99  PPLLMGPNGPLPPPMMGMRP--PP 120


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,113
Number of Sequences: 2352
Number of extensions: 10337
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 102535848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)