Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C18
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.04c |||guanyl-nucleotide exchange factor |Schizosaccharo...    28   1.7  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     27   3.8  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   5.1  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    26   6.7  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   6.7  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.9  

>SPBC4C3.04c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +2

Query: 191 IRVITQERTCEQKASKRPGTVKRPRLLAFFH-RLRPPXRASQKSTLKSEVAKPDRTIKIP 367
           +R++ Q        +KRP  VKRP + A  H   +          LK   A  + ++  P
Sbjct: 4   LRIVCQHCPSVVFNNKRPDVVKRPTMSAMLHSETQEDLETDDFFLLKDPFAFDNVSVSKP 63

Query: 368 GVSPWKLPRCA 400
             + +KL  CA
Sbjct: 64  LANNYKLLACA 74


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 435 CPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIV 587
           C  F +R    +++  A  +     + + +W VCT+   + T   YP  IV
Sbjct: 138 CFDFRVRHPHNYMVKFAKSLKFSSSTASIAWNVCTDAYKTYTMLKYPAHIV 188


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 411 RPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPV 578
           R   L +T  PFS++   RF I HA   +VR    A  W +  +  F    +P+ +
Sbjct: 434 RSILLVNTNEPFSMKT--RFKIQHATEWNVRVVGVAWLWNIIQSGKFIDQVSPWAI 487


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 625 SGDKSCLXRVGLKTIVTG*GAAVGLNGGFVHTAQLGANDLHR 500
           +GD   L   G +T+  G G  +GL  G +   ++G +  +R
Sbjct: 419 NGDWQTLIDSGARTLPAGCGPCIGLGTGLLKDGEVGISATNR 460


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 756 WLQQS-ADTKYCSSSVAVVRPPLQELCST 673
           WL    AD KY    +AV+  PL+E C T
Sbjct: 371 WLSSKVADFKYEPIQMAVLHIPLKEFCET 399


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +3

Query: 297 LXEHHKNRRSSQRWRNPTGL*RYQAF----PPG 383
           L ++HKNR+S+     P GL  Y+A     PPG
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPG 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,427,647
Number of Sequences: 5004
Number of extensions: 68346
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)