Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C18
(945 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0027 + 178942-179055,179140-179253 31 1.3
03_02_0371 + 7858170-7859624 30 2.3
10_08_0949 - 21759821-21759833,21759985-21760301,21760650-217607... 29 4.1
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787... 29 4.1
12_01_0816 + 7502669-7503145 29 5.4
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 29 7.1
03_06_0528 - 34526038-34526164,34526250-34526500,34526584-345268... 29 7.1
01_01_0412 - 3099509-3099634,3099758-3099904,3099991-3100089,310... 29 7.1
02_03_0099 + 15206282-15206917 28 9.4
>05_01_0027 + 178942-179055,179140-179253
Length = 75
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 303 EHHKNRRSSQRWRNPTGL*RYQAFPPGSSLXALSCFRPCRL-PDTCPPFSL 452
E H+ R +RWR R FPP + L SC RPC L P T P F+L
Sbjct: 7 EGHR-RAGCRRWREGMAEAR---FPPKAYLCD-SCLRPCTLHPTTIPAFAL 52
>03_02_0371 + 7858170-7859624
Length = 484
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 552 SPTAAPYPVTIVLSPTRXRHDLSPLAAAT 638
SP+AAP P SP R H SP AAAT
Sbjct: 67 SPSAAPAPRAAPDSPRRSLHTSSPSAAAT 95
>10_08_0949 -
21759821-21759833,21759985-21760301,21760650-21760728,
21760816-21760912,21761305-21761410
Length = 203
Score = 29.5 bits (63), Expect = 4.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 519 PSWAVCTNPPFSPTAAPYPVTIVLSPTRXRHDLSPLAAATGNRISRARYVG 671
P+ A P P AAP P T+V L P++AA + +S ++ G
Sbjct: 126 PAPAPAPAPATVPPAAPVPSTVVPPVAAPSSSLPPMSAAGASAMSPMQFAG 176
>01_06_0451 -
29476892-29477516,29477600-29477843,29478313-29478714,
29481164-29481358,29481418-29481537,29481615-29481683,
29481901-29481999,29483857-29483946,29484049-29484180,
29485062-29485173
Length = 695
Score = 29.5 bits (63), Expect = 4.1
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 242 PGTVKRPRLLAFFHRLRPPXRASQKSTLKSEVAKPDRTIKIPGVSPWKLPRCA-LLFPTL 418
P ++ PRL + ++PP S++ ++ E+ P TI G++ LP + +FP
Sbjct: 70 PSQLQTPRLQSLGLNVKPPAATSRRVNVQQELYAPSPTISHRGLAIPPLPTTSPPVFPP- 128
Query: 419 PLTGY 433
P+ Y
Sbjct: 129 PIRSY 133
>12_01_0816 + 7502669-7503145
Length = 158
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 569 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 438
R SG +R V PAW ER + ++ +V E+A ERR
Sbjct: 8 RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 28.7 bits (61), Expect = 7.1
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 383 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAN-AAFL 252
SRGK L+S + R PP + + V+ + GGG G P AFL
Sbjct: 25 SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGTILAFL 69
>03_06_0528 -
34526038-34526164,34526250-34526500,34526584-34526804,
34526963-34527017
Length = 217
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 537 TNPPFSPTAAPYPVTIVLSPTRXRHDLSPLAAATG 641
T+P SP AA V+ + SP R D+SPLAA+ G
Sbjct: 57 TSPLASPRAAANVVSPLASP-RAAGDISPLAASPG 90
>01_01_0412 -
3099509-3099634,3099758-3099904,3099991-3100089,
3100171-3100602,3101121-3101599,3101683-3101728
Length = 442
Score = 28.7 bits (61), Expect = 7.1
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +3
Query: 384 SSLXALSCFRPCRLP-DTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPT 560
S++ A F P + DT P + + + A+ V S+ P+ + T+ P
Sbjct: 215 SAIFASGVFAPRHVHGDTVPSYIHLPSVASSSSTAIPHEVIIPSYQPATSATTSTPMR-A 273
Query: 561 AAPYPVTIVLSPTRXRHDLSPLAAATGNRISRARYVG 671
+ P PV V S R+ L A + NR +R+ Y G
Sbjct: 274 SQPLPVRAVASSRHARNVLIGHANSGRNRRARSSYYG 310
>02_03_0099 + 15206282-15206917
Length = 211
Score = 28.3 bits (60), Expect = 9.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 255 KGRVCWRFSIGSAPLXEHHKNRRSSQRW 338
KG +G P ++H++RRS+ RW
Sbjct: 167 KGVEVLHVGVGKGPSLQNHRDRRSTSRW 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,305,357
Number of Sequences: 37544
Number of extensions: 575806
Number of successful extensions: 1756
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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