Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C16
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 83 7e-17
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 65 1e-11
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 61 2e-10
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 60 5e-10
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 44 3e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 30 0.38
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 29 0.67
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 29 0.88
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 29 1.2
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 27 2.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 4.7
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 6.2
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 82.6 bits (195), Expect = 7e-17
Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Frame = +1
Query: 355 KNPTEDYLEGMMNEAP----GPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENNGVI 522
++PT L+ M+NE G I+FT FLT+ +++ TD E+ ++ AF FD++ NG I
Sbjct: 43 QSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYI 102
Query: 523 GEERLRELLTTMGDRFTDDDVDEMLREAPI-RDGLFDYVEFTRIL 654
E L +LT++G+R + ++V +M+REA DG+ +Y EF+R++
Sbjct: 103 TVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVI 147
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +3
Query: 255 QIAEFKEAFNMIDQNRDGFIDKDDLHDMLASLXQKP 362
QIAEF+EAF++ D+++DG I ++L ++ SL Q P
Sbjct: 10 QIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSP 45
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 240 MFDQAQIAEFKEAFNMIDQNRDGFIDKDDLHDMLASLXQK 359
M D E +EAF + D++ +G+I ++L +L SL ++
Sbjct: 78 MKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGER 117
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 64.9 bits (151), Expect = 1e-11
Identities = 35/124 (28%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Frame = +1
Query: 295 RTGMDSLTRTICMICLHL*XKNPTEDYLEGMMNEAPGPINFTMFLTLF----GERLQGTD 462
R G + +T L +NPT + + + P ++ FL + G + G D
Sbjct: 17 RHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPG-D 75
Query: 463 PEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEMLREAPIRDGLFDYVEF 642
PE+ +K F FD++ G+IG LR +LT++G++ +++++DE+L+ P++DG+ +Y +F
Sbjct: 76 PEEFVKG-FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNYHDF 134
Query: 643 TRIL 654
+++
Sbjct: 135 VQMI 138
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 267 FKEAFNMIDQNRDGFIDKDDLHDMLASLXQKP 362
+K+AF++ D++ G I K + D+L + Q P
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNP 39
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 61.3 bits (142), Expect = 2e-10
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +1
Query: 358 NPTEDYLEGMMNEAPGPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENNGVIGEERL 537
N T+ L + NE I+ F++ +L+ T+ E+ AF FD++N+G I +
Sbjct: 41 NVTDAELAKLSNELGDAIDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKF 100
Query: 538 RELLTTMGDRFTDDDVDEMLREA-PIRDGLFDYVEFTR 648
+ + T+G++ +D++V M++EA P G FDY +F +
Sbjct: 101 ADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQ 138
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 255 QIAEFKEAFNMIDQNRDGFIDKDDLHDMLASL 350
Q E KEAF + D ++DG I + +L SL
Sbjct: 7 QTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSL 38
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 59.7 bits (138), Expect = 5e-10
Identities = 34/108 (31%), Positives = 55/108 (50%)
Frame = +1
Query: 355 KNPTEDYLEGMMNEAPGPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENNGVIGEER 534
++ +ED + M PIN FLT G L P + + AF FD+ +G I
Sbjct: 79 QDASEDSINHMFESINPPINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPIST 138
Query: 535 LRELLTTMGDRFTDDDVDEMLREAPIRDGLFDYVEFTRILKHGAKDKD 678
+R+ L++MGDR +V+ +LR + G+F Y +F + G+KD +
Sbjct: 139 MRDALSSMGDRMDPQEVESILR-SYTSHGVFYYEKFVDAIA-GSKDSN 184
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 44.0 bits (99), Expect = 3e-05
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 403 GPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDD 582
G + F+ + E++ DP + IK AF FD++ G I LR + + + D +
Sbjct: 88 GYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQE 147
Query: 583 VDEMLREAPI-RDGLFDYVEFTRIL 654
++ M+ E + +DG + EF I+
Sbjct: 148 LEAMIEEFDLDQDGEINEQEFIAIM 172
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 30.3 bits (65), Expect = 0.38
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Frame = +1
Query: 355 KNPTEDYLEGMMNEAP-GPINFTMFLTLFGERLQGTDPEDVIKNAFGCFDEENNGVIG-E 528
K + + +G + P G +N + F ++ + DP + F FD + NG I +
Sbjct: 24 KKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFK 83
Query: 529 ERLRELLTTMGDRFTDDDVDEMLREAPIRDGLFDYVEFTRIL 654
E + L T D + +GL Y E RI+
Sbjct: 84 EFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIV 125
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 195 INKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGFID 317
+NK Q+ F D + AE+ FN+ D +++G+ID
Sbjct: 43 LNKSEFQKIYKQFFPFGDPSAFAEY--VFNVFDADKNGYID 81
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 29.5 bits (63), Expect = 0.67
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 299 VLINHIESLLELCYLSLIKHSKHIGGCTL--CALLVNATTGCL 177
+LIN ++S + LC+L H + + T+ C +V ++ C+
Sbjct: 1119 ILINFLDSFIRLCHLPAKTHDERVTAVTVIRCTQIVALSSSCV 1161
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 29.1 bits (62), Expect = 0.88
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 606 CFPEHFIHIIVCEAIAHCGKQL-AESLLTDYTIVLFIETPKCIF 478
CF F H I C A+ K + + +T YT++ + +P I+
Sbjct: 137 CFASIFFHAIACYALYLLTKSIFSNQKMTAYTVIFYCFSPSGIY 180
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1
Query: 403 GP-INFTMFLTLFGERLQG----TDPEDVIKNAFGCFDEENNGVIGEERLREL 546
GP + F + L LF QG TD V+K CFD N G +E++ L
Sbjct: 404 GPRVLFQVALALFKVNAQGILNATDDSSVMKVFRQCFDHINQGTAADEKMAAL 456
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 264 EFKEAFNMIDQNRDGFIDKDDLHDMLASLXQ 356
E +EAF++ D G+ID +DL A L +
Sbjct: 13 EAEEAFDLFDVTHKGYIDFEDLRRSCAQLGE 43
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 518 TPLFSSSKHPNAFLMTSSGSVPCSLSPNRVRNIVKLIGPGASFIIPSK*SSV 363
TP S P +++SS S+P S S + +I + +S IPS SSV
Sbjct: 525 TPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSV 576
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 457 TDPEDVIKNAFGCFDEENNGVIGEERLRELLTTMGDRFTDDDVDEM 594
TD D++KN F F+ +N + L +L + DD + +
Sbjct: 826 TDESDIVKNTFVSFNTTSNSLGNTTALSQLKGHINSVIVDDSYNNI 871
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,468,780
Number of Sequences: 5004
Number of extensions: 70645
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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