Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C14
(966 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 35 0.020
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.42
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 29 0.74
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.74
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.0
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.7 bits (76), Expect = 0.020
Identities = 31/82 (37%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Frame = -1
Query: 705 GGXVXPXGGXXXXGXXXXPGGXGGXGGF-----XRPXXGPFWGXFFPLXAPLWGRGGXPG 541
GG GG G PGG GG GGF G F G G GG PG
Sbjct: 187 GGGFGGFGGGSG-GPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245
Query: 540 XXPXGGXGGSXGLPXXGXXGGG 475
GG GG G P G GGG
Sbjct: 246 GF-GGGLGGFGGGP--GGFGGG 264
Score = 34.3 bits (75), Expect = 0.026
Identities = 37/92 (40%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Frame = -1
Query: 762 FXXFXXG-GGPPXG----GXXXXXGGXVXPXGGXXXXGXXXXPGG-XGGXGGFXRPXXGP 601
F F G GGPP G G GG GG G PGG GG GGF GP
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG--PGGFEGGPGGF---GGGP 244
Query: 600 FWGXFFPLXAPLWGRGGXPGXXPXGGXGGSXG 505
G F L G GG PG GG GG G
Sbjct: 245 --GGF---GGGLGGFGGGPGGF-GGGPGGHGG 270
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -1
Query: 741 GGPPX-GGXXXXXGGXVXPXGGXXXXGXXXXPGGXGGXG 628
GGP GG GG + GG G PGG GG G
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPG-GFGGGPGGHGGPG 272
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.3 bits (65), Expect = 0.42
Identities = 24/63 (38%), Positives = 25/63 (39%)
Frame = -1
Query: 666 GXXXXPGGXGGXGGFXRPXXGPFWGXFFPLXAPLWGRGGXPGXXPXGGXGGSXGLPXXGX 487
G P G GG GGF R G G F +G GG G G GGS G G
Sbjct: 129 GARNGPAGRGGRGGF-RGGRGGSRGGFGGNSRGGFG-GGSRGGFGGGSRGGSRGGFRGGS 186
Query: 486 XGG 478
GG
Sbjct: 187 RGG 189
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 29.5 bits (63), Expect = 0.74
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 582 PLXAPLWGRGGXPGXXPXGGXGGSXGLPXXGXXGG 478
P+ A ++ GG PG P G GG+ G G G
Sbjct: 603 PIMAKIYQAGGAPGGAPGGMPGGAPGGAPGGADNG 637
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.74
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 458 PXGXKXPPPXXPXXGXPXDPPXPP 529
P G PPP P P PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 666 PXXXXPPXGXPPPPKXXPXPPXG 734
P PP G PP + P PP G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 666 PXXXXPPXGXPPPPKXXPXPPXGGPP 743
P PP PPPP P P GPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMP--AGPP 1728
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 416 PXXXPPGXGXXRXPPXGXKXPPPXXPXXGXPXDPPXPP 529
P PP P PPP P G P PP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPA-PIMGGPPPPPPPP 768
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 416 PXXXPPGXGXXRXPPXGXKXPPPXXPXXGXPXDPPXPP 529
P PP PP PPP G P PP PP
Sbjct: 748 PIPVPPPAPIMGGPPP--PPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 635 PPXPPGXXXXPXXXXPPXGXTXPPXXXXXPPXGGPPP 745
PP PP P P P PP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 681 PPXGXPPPPKXXPXPPXGGPP 743
P G PPPP P GPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPP 776
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.3
Identities = 30/124 (24%), Positives = 32/124 (25%), Gaps = 14/124 (11%)
Frame = +2
Query: 416 PXXXPPGXGXXRXPPXGXKXP---PPXXPXXGXPXDPPXPPXXXXXXXXXXXXXXXXXXK 586
P PP G PP P P PP PP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313
Query: 587 XXP----QKG-PXXGRXKP----PXPPXPPGXXXXPXXXXPPXGXT--XPPXXXXXPPXG 733
P +G P G P PP PP PP G + PP P G
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 734 GPPP 745
PP
Sbjct: 374 RQPP 377
Score = 27.9 bits (59), Expect = 2.3
Identities = 24/113 (21%), Positives = 25/113 (22%), Gaps = 3/113 (2%)
Frame = +2
Query: 416 PXXXPP---GXGXXRXPPXGXKXPPPXXPXXGXPXDPPXPPXXXXXXXXXXXXXXXXXXK 586
P PP G PP G PPP P PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 587 XXPQKGPXXGRXKPPXPPXPPGXXXXPXXXXPPXGXTXPPXXXXXPPXGGPPP 745
P G P P P P + PP P P P
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/52 (28%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Frame = +2
Query: 593 PQKGPXXGRXKPPXPPXPP-GXXXXPXXXXPPXGXTXPPXXXXXPPXGGPPP 745
P P P PP PP P P PP PP P P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Frame = +2
Query: 593 PQKGPXXGRXKPPXPPX-PPGXXXXPXXXXPPXGXTXPPXXXXXPPXGGPPP 745
P P PP P PP PP + P PP PPP
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 25.8 bits (54), Expect = 9.1
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = +3
Query: 681 PPXGXPPPPKXXPXPPXGGPP 743
PP PP P P P PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPP 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,717,839
Number of Sequences: 5004
Number of extensions: 23872
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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