Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C14
         (966 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    38   5e-04
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            29   0.21 
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    27   1.1  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   2.6  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   4.5  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   5.9  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   7.8  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    24   7.8  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   7.8  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 37.9 bits (84), Expect = 5e-04
 Identities = 26/70 (37%), Positives = 26/70 (37%)
 Frame = -1

Query: 684 GGXXXXGXXXXPGGXGGXGGFXRPXXGPFWGXFFPLXAPLWGRGGXPGXXPXGGXGGSXG 505
           GG    G     GG GG G F                 P  G GG  G  P GG GGS G
Sbjct: 162 GGRSSSGGGGGGGGGGGAGSFAAALRNLAKQADVKEDEPGAGGGGSGGGAP-GGGGGSSG 220

Query: 504 LPXXGXXGGG 475
            P  G  GGG
Sbjct: 221 GPGPGGGGGG 230



 Score = 29.1 bits (62), Expect = 0.21
 Identities = 28/84 (33%), Positives = 29/84 (34%)
 Frame = -1

Query: 666 GXXXXPGGXGGXGGFXRPXXGPFWGXFFPLXAPLWGRGGXPGXXPXGGXGGSXGLPXXGX 487
           G     GG GG GG      G   G F      L  +       P  G GGS G    G 
Sbjct: 162 GGRSSSGGGGGGGG------GGGAGSFAAALRNLAKQADVKEDEPGAGGGGSGG----GA 211

Query: 486 XGGGXFXPXGGXRXXPXPGGXXXG 415
            GGG     GG    P PGG   G
Sbjct: 212 PGGG-----GGSSGGPGPGGGGGG 230


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 651 GXXXXPXXXXPPXGXPPPPKXXPXPPXGGPP 743
           G    P    PP   PPPP   P  P  G P
Sbjct: 572 GFPNLPNAQPPPAPPPPPPMGPPPSPLAGGP 602



 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +2

Query: 605 PXXGRXKPPXPPXPPGXXXXPXXXXPPXGXTXPPXXXXXPPXGGPPP 745
           P     + P  P  P     P    P      PP     PP  GPPP
Sbjct: 550 PPLNLLRAPFFPLNPAQLRFPAGF-PNLPNAQPPPAPPPPPPMGPPP 595



 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 666 PXXXXPPXGXPPPPKXXPXPPXGGP 740
           P    PP    PPP      P GGP
Sbjct: 582 PPAPPPPPPMGPPPSPLAGGPLGGP 606


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +2

Query: 626 PPXPPXPPGXXXXPXXXXPPXGXTXPPXXXXXPP 727
           PP P   PG    P     P G   PP     PP
Sbjct: 86  PPRPGMIPGMPGAPPLLMGPNGPLPPPMMGMRPP 119


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 36/126 (28%), Positives = 39/126 (30%), Gaps = 3/126 (2%)
 Frame = -1

Query: 738 GPPXGGXXXXXG-GXVXPXGGXXXXGXXXXPGGXGGXGGFXRPXXGPFWGXFFPLXAPLW 562
           G P GG       G   P G     G     G  G  G   R   GP  G   P   P  
Sbjct: 401 GAPGGGEGRPGAPGPKGPRGYEGPQGPKGMDGFDGEKG--ERGQMGPKGGQGVP-GRP-- 455

Query: 561 GRGGXPGXXPXGGXGGSXGLPXXGXXGGGXFXP-XGGXRXXP-XPGGXXXGKTXXXXXXV 388
           G  G PG     G  GS G+P      G    P   G R  P  PG    G+        
Sbjct: 456 GPEGMPGDKGDKGESGSVGMPGPQGPRGYPGQPGPEGLRGEPGQPGYGIPGQKGNAGMAG 515

Query: 387 IPRVXG 370
            P + G
Sbjct: 516 FPGLKG 521


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
 Frame = -1

Query: 648 GGXGGXGGFXRPXXGPFWGXFFPLXAP---LWGRGGXPGXXPXGGXGGSXGLPXXGXXGG 478
           GG GG GG      G   G F     P   +   GG  G    G  GG+ G    G   G
Sbjct: 812 GGNGGGGG-----AGASGGGFLITGDPSDTIGAGGGGAGGPLRGSSGGAGGGSSGGGGSG 866

Query: 477 G 475
           G
Sbjct: 867 G 867


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 384 GXPXGXXGXFFRXPXPLGRGXFGXPPXGKXP 476
           G P G  G   R P P+  G  G PP G  P
Sbjct: 289 GMPSGMVGPP-RPPMPMQGGAPGGPPQGMRP 318



 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +2

Query: 605 PXXGRXKPPXPPXPPGXXXXPXXXXPPXGXTXPP 706
           P  G    P PP P G    P     P     PP
Sbjct: 201 PRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPP 234


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 724  GXGXXXGGGGXPXGG 680
            G G   GGGG P GG
Sbjct: 2055 GGGSISGGGGTPGGG 2069


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 727 GGXGXXXGGGGXPXG 683
           GG G   GGGG P G
Sbjct: 14  GGGGGGGGGGGGPSG 28


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -1

Query: 567 LWGRGGXPGXXPXGGXGGSXGLPXXGXXG 481
           L G  G PG     G  G  G+P  G  G
Sbjct: 324 LRGNDGIPGLEGPSGPKGDAGVPGYGRPG 352


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,809
Number of Sequences: 2352
Number of extensions: 9499
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 105241344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)