Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C13
         (936 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.7  
04_01_0176 + 2003707-2004130,2004689-2004861                           29   5.3  
03_06_0149 - 31987183-31987630,31987813-31987874                       29   5.3  
06_03_0335 + 19662933-19663334,19663358-19664023                       29   7.0  
06_03_0218 + 18219956-18220555                                         29   7.0  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   7.0  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.3  
08_01_0086 - 629043-629594                                             28   9.3  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +1

Query: 517 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRFPLEAPSCALLFRPCRLP 675
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>04_01_0176 + 2003707-2004130,2004689-2004861
          Length = 198

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = -3

Query: 853 VAXNVTVIXXVPKXAAVGLNGGSCXTAQLERTTYTELRYLQREL*ESATLPEGRKA 686
           +A  VT     P+ AAV LNGGS  +++L  TT   L  L         +P GR A
Sbjct: 61  LAAAVTPRSDAPQVAAVDLNGGSSSSSRLTTTTPPPLLQLGCRQALPFIVPTGRCA 116


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 725 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRXV 612
           A+ + H   R +   +  +R+GR R AHEG   G   V
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEPV 113


>06_03_0335 + 19662933-19663334,19663358-19664023
          Length = 355

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -2

Query: 779 HSPAGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 624
           H P  A  LH   +P A   R+R A RR   G+V+        R   GA+ G
Sbjct: 142 HRPLAARPLHVPGVPRAPGARRRAAQRRR--GRVAAAAAAAPVRPVAGAAHG 191


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 704 SRREKGGQVSG--KRQGRNRRAHEGASRGKRXVS 609
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 349 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 504
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 298 NESAN---ARGEAVCVLGALPLPRSLTRCAR 381
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>08_01_0086 - 629043-629594
          Length = 183

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 21/82 (25%), Positives = 30/82 (36%)
 Frame = -2

Query: 863 YVTXXXECYGDQXSTEXXSGRAERGFVXHSPAGANDLHRTEIPTA*AMRKRHASRREKGG 684
           Y T    C G        +G   RG++       + L R+      A R   A++ E GG
Sbjct: 6   YWTFHRTCGGHIVGRHGGAGGDRRGYIPSDDGVCDHLERSR-----ASRGEEAAQVEGGG 60

Query: 683 QVSGKRQGRNRRAHEGASRGKR 618
           +  G      RR H     G+R
Sbjct: 61  EARGGGAQWGRRRHGWRGEGRR 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,577,456
Number of Sequences: 37544
Number of extensions: 487634
Number of successful extensions: 1474
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)