Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C13
         (936 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    30   2.5  
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    29   3.4  
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    29   3.4  
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    29   3.4  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   4.4  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.9  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.9  
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3...    28   7.7  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.7  
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ...    28   7.7  

>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 737 PTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 621
           P   A R RH+ R  +GG+ S  R  R R +  GA RG+
Sbjct: 571 PARGAPRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608


>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 639 LVRSPVPTLPLTGYLSAFLPSGSVAL 716
           L+R    +LP T Y  +FLPS +VAL
Sbjct: 15  LLRISTASLPATNYFDSFLPSDAVAL 40


>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -1

Query: 591 FATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLS 412
           F  S  S+D+         YG   A  P YGS P  G+    +   YP + +     P++
Sbjct: 138 FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPVT 197

Query: 411 ELIPL 397
              PL
Sbjct: 198 GYAPL 202


>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -1

Query: 450 PLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAEKTSH 277
           P+ L IT++PP +     + A++P              + N+L P+  R I   AEK +H
Sbjct: 264 PVKLKITIIPPKARRTIPSEADKPTHTDELN-------FMNKLPPKRRRTIPSEAEKPTH 316

Query: 276 TSTLNLKHKM 247
           T  LN  +K+
Sbjct: 317 TDELNFMNKL 326


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 540 RPPDEHHKNRRSSQRW 587
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 349  PLPRSLTRCARSFGCGERYQLTQRR 423
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 349  PLPRSLTRCARSFGCGERYQLTQRR 423
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
           - Arabidopsis thaliana, EMBL:AC009755
          Length = 927

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
 Frame = -1

Query: 765 SERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAG-SEQESARGSFQGETXGIFIVLSGF 589
           S + + N    ++S +K       +++T      G S + S+R SF           S F
Sbjct: 50  SGKASDNVGDTNISADKKETEKSKKKKTAKEKQRGVSSESSSRLSFSSSPCS-----SSF 104

Query: 588 ATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 472
           +++D+S       Q G + G+ P   P  GS  + GL++
Sbjct: 105 SSADISTTASQFEQPGLSNGENPVREPTNGSPRWGGLMM 143


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 340 PIRKPPLPARWPIH*CRKNLPHL 272
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 245

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -1

Query: 591 FATSDLSVDFCDARQGG-GAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPL 415
           F  S  S+D+    Q     YG   A  P YGS P  G+    +   YP + +     P+
Sbjct: 138 FGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPV 197

Query: 414 SELIPL 397
           +   PL
Sbjct: 198 TGYAPL 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,092,959
Number of Sequences: 28952
Number of extensions: 346817
Number of successful extensions: 885
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2236853040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)