Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C12
(934 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc... 31 0.23
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 30 0.41
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 29 0.94
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 2.2
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 28 2.2
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 28 2.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 28 2.2
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 2.9
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 6.6
SPAC664.08c |||traub transciption factor family protein |Schizos... 26 6.6
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 26 6.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.6
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 6.6
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 26 6.6
>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 209
Score = 31.1 bits (67), Expect = 0.23
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 401 SSSNQNTEDEDDSGDNKASALSFKERR--REAHTQAEQKRRDAIKKGYDSLQDLXAYLXS 574
+S N + + DDSGD S L+ ++ + + QA QK R KK +LQD Y S
Sbjct: 99 ASHNSPSRELDDSGDENTSKLTGTKQSMLKARNRQAAQKCRIKKKKYLQTLQDQVNYYTS 158
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 30.3 bits (65), Expect = 0.41
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +2
Query: 389 HQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQ---KRRDAIKKGYDSLQDLX 559
+ P N +T DED S + S+ REA++ A + +RR +DSL+
Sbjct: 974 YSNPDDKNTSTSDEDTSESEEESSNGLFSLAREANSHASKSLPQRRQIQFLDFDSLKTKN 1033
Query: 560 AYLXSRVMRLATNQAKLQSFR 622
+++ R A+L R
Sbjct: 1034 VVHPTQLRRNTQQSAQLARLR 1054
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 29.1 bits (62), Expect = 0.94
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 365 SSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 520
S+G+ + QTP+S +N EDE+ K RR Q ++K+ D
Sbjct: 44 STGTESEVIQTPTSVEENNEDENSMSTTTIEIPVVK--RRNLRNQKKKKKTD 93
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = +2
Query: 446 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLXAYLXSRVMRL----ATNQAKLQ 613
+K + +SFK+++ E +Q+ Q + YD+ + A L + + L ++++L+
Sbjct: 953 DKLNKMSFKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLKTELQSLNKYVDEHKSRLR 1012
Query: 614 SFRNQL 631
F N L
Sbjct: 1013 EFENAL 1018
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 380 QNIHQTPSSSNQNTEDEDDSGD--NKASALSFKERRREAHTQ 499
Q + + ++++ D DDS D NK S +S K R+ E+++Q
Sbjct: 105 QELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRKTESNSQ 146
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +2
Query: 362 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 541
GS S++ S+++ DED+ DNK ++R+ + ++ +KR I Y+
Sbjct: 231 GSDQSMETSESEEEESSESESDEDEDEDNKG---KIRKRKTDDAKKSRKKRAPHIHIEYE 287
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 398 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQD 553
PS+ + +D DD N S+ S K + + TQA + + D + G + +D
Sbjct: 87 PSTDKKKKKDNDDFKQNLKSS-SNKTEEKYSATQASKSKNDEFELGGEENED 137
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +2
Query: 413 QNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLXAYLXSRVMRLA 592
Q T +E S K + L ++ E+ ++ + R + + YD L+ + S+++ L
Sbjct: 663 QGTLEEATSYYQKNTELQQLLKQNESASELLKSRNEKLCVDYDKLRSVFEEDSSKILSLQ 722
Query: 593 TNQAKLQSFRNQLTTSSICYNS 658
LQS Q++ + Y S
Sbjct: 723 KENENLQSQILQISEELVDYRS 744
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 389 HQTPSSSNQNTEDEDDSGDNKASALS 466
+ TP S + ED+D +G NK +A S
Sbjct: 365 NNTPMSEKRKREDDDANGPNKFAARS 390
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Frame = +2
Query: 365 SSGSIQNIHQTPSSSNQNTEDEDDS--------GDNKASALSFKERRREAHTQAEQKRRD 520
+SGS+ + +PS + EDE+D+ ++AS++S + + + +K D
Sbjct: 81 NSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDDDQSSAIPEKDMD 140
Query: 521 AIKK 532
+KK
Sbjct: 141 RLKK 144
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 264 HELRKVKDRINVMFYFIKVSL*QLISQYVSSFVAVADLFK 383
+++ +K+ ++FYF + S Q I VSS + V +L K
Sbjct: 399 NKVHTIKEFEKIVFYFYEASDLQQIRSLVSSLITVEELPK 438
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +2
Query: 401 SSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQ---KRRDAIKKGYDSLQDLXAYLX 571
SSS + + +D+ K SALSFK+ + + A++ ++ I+K +++ +
Sbjct: 1028 SSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKERSLMKECHSNYE 1087
Query: 572 SRVMRLATNQAKLQSFRNQ 628
S ++ KL+ R +
Sbjct: 1088 SEIVSHGRTTQKLRDLRTE 1106
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 807 LKFVLVRQPLLIQTRYGMLSFNNLFIIC 724
L F + RQPLL T + +NN +++C
Sbjct: 727 LPFSVSRQPLLSLTNDILQLYNNFYVLC 754
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 362 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 520
G SG + + S+ ++++ D+ D+ LS ERR + +QK++D
Sbjct: 378 GYSGYVAGLSSRDPDSDFDSDNVDEYIDDHKRGLSSTERRDLDRVRDKQKKQD 430
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,000
Number of Sequences: 5004
Number of extensions: 68381
Number of successful extensions: 238
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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