Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C12
         (934 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.32 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.98 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   4.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 395  TPSS-SNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 520
            TP S S   + DED + D  ++ L    R RE H   +Q+ RD
Sbjct: 1399 TPLSISRAGSRDEDSTRD--STKLDRSSREREVHNGGQQEDRD 1439


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.98
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = +3

Query: 231 HTLHRNNGTRHHELRKVKDRINVMFYFIKVSL*QLISQYVSSFVAVADLFKTYIKRRPPQ 410
           HT+    G  HH        +  + Y    +L +  S YV+S  A    F T     PP+
Sbjct: 341 HTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTPSPPR 400


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 718 MQANYEQIVKAQHSVPGLNEQRLTDQDK 801
           ++A + +++   H+    NE+RL +QD+
Sbjct: 386 LEAQWSRVLGRVHATIERNEKRLAEQDR 413


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 401 SSSNQNTEDEDDSGDN 448
           S++N NT  E++S DN
Sbjct: 135 SNANSNTTSEEESSDN 150


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +2

Query: 377 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRD 520
           I+N H   ++ N N ++ ++  DN       K  ++ A+ Q    + D
Sbjct: 409 IRNTHCVNNNQNDNIQNTNNQNDNNQ-----KNNKKNANNQKNNNQND 451


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 337 YPNMYPRLWQ*RIYSKHTSNAVLLK 411
           Y  +Y ++W   I  + T+N V+ K
Sbjct: 285 YKTLYKQMWSQNITERPTTNEVITK 309


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +2

Query: 392 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKG 535
           Q  +  N N ++ +   DNK +     + ++  + Q   K+ D  + G
Sbjct: 460 QNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNG 507


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 69  GNNTCILVISNLKFDFSITLRKCYVTTWFKSDLIRVMKYLS 191
           GN TCI ++ NL+      L   Y+     S LI VM +++
Sbjct: 198 GNFTCIQIVFNLRRRLGYHLFHTYI----PSALIVVMSWIA 234


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 362 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFK 472
           G+SGS    + +  S+NQ +    ++  N  S  SFK
Sbjct: 599 GASGSGSAENLSSGSNNQTSSASRENTSNTTSMESFK 635


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,296
Number of Sequences: 438
Number of extensions: 4667
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)