Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C12
(934 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27120.2 68417.m03898 expressed protein 39 0.004
At4g27120.1 68417.m03897 expressed protein 39 0.004
At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family pr... 38 0.007
At1g42990.1 68414.m04949 bZIP transcription factor family protei... 34 0.12
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 33 0.27
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 33 0.36
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr... 32 0.63
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr... 32 0.63
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr... 31 0.83
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr... 31 0.83
At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr... 31 0.83
At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family pr... 31 1.1
At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family pr... 31 1.1
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 31 1.1
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 31 1.1
At5g48657.1 68418.m06020 defense protein-related weak similarity... 31 1.4
At3g29075.1 68416.m03637 glycine-rich protein 31 1.4
At3g28770.1 68416.m03591 expressed protein 30 1.9
At2g44200.1 68415.m05500 expressed protein 30 1.9
At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763... 30 1.9
At1g11880.1 68414.m01370 expressed protein contains Pfam profile... 30 2.5
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)... 29 3.3
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)... 29 3.3
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr... 29 3.3
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr... 29 3.3
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 29 3.3
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 29 4.4
At3g30725.1 68416.m03909 expressed protein ; expression supporte... 29 4.4
At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family pr... 29 4.4
At5g63720.1 68418.m07998 hypothetical protein 29 5.8
>At4g27120.2 68417.m03898 expressed protein
Length = 298
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +2
Query: 362 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 541
G+S S N+ + S S EDED++G +A A KE++R+ +A+++ +A ++ +
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQ-EREAQRQAEEATRESRN 120
Query: 542 SLQDLXA 562
+ QD A
Sbjct: 121 TKQDWYA 127
>At4g27120.1 68417.m03897 expressed protein
Length = 298
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +2
Query: 362 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 541
G+S S N+ + S S EDED++G +A A KE++R+ +A+++ +A ++ +
Sbjct: 64 GASSSTSNVQENGSGSED--EDEDEAGGTQARASKKKEKKRQ-EREAQRQAEEATRESRN 120
Query: 542 SLQDLXA 562
+ QD A
Sbjct: 121 TKQDWYA 127
>At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 399
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 362 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREA-HTQAEQKRRDAIKKGY 538
GS + + H + S EDE++ S++S K R A H Q+E+KRRD I +
Sbjct: 174 GSHDNTIDDHDSVCHSRPQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRM 233
Query: 539 DSLQDL 556
+LQ L
Sbjct: 234 KTLQKL 239
>At1g42990.1 68414.m04949 bZIP transcription factor family protein
contains Pfam profile: PF00170: bZIP transcription
factor
Length = 295
Score = 34.3 bits (75), Expect = 0.12
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Frame = +2
Query: 323 IITINIPICILVCGSSGSIQNIHQTPSSSNQNTEDEDDS-GDNKASALSFKERRREAHTQ 499
++T++ P G S + + + S D+DD GD+ A A K RRR +
Sbjct: 95 VLTVDSPAAADDSGKENSDLVVEKKSNDSGSEIHDDDDEEGDDDAVAK--KRRRRVRNRD 152
Query: 500 AEQKRRDAIKKGYDSLQDLXAYLXSRVMRLATN----QAKLQSFRNQLTTSSICYNSVVD 667
A + R+ K+ L+ YL +RL A+ QS R L + +++
Sbjct: 153 AAVRSRERKKEYVQDLEKKSKYLERECLRLGRMLECFVAENQSLRYCLQKGNGNNTTMMS 212
Query: 668 RKKSAMHCVKMLSL 709
+++SA+ ++ L L
Sbjct: 213 KQESAVLLLESLLL 226
>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
putative similar to PIF3 like basic Helix Loop Helix
protein (PIL1) [Arabidopsis thaliana] GI:22535492;
contains Myc-type, 'helix-loop-helix' dimerization
domain signature, PROSITE:PS00038
Length = 416
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 371 GSIQNIHQTPSSSNQNTEDEDDSGDNKASA---LSFKERRREAHTQAEQKRRDAIKKGYD 541
G I+ T S+N + E +D A ++ ++R E H E+KRRD K
Sbjct: 191 GDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMR 250
Query: 542 SLQDL 556
+LQDL
Sbjct: 251 ALQDL 255
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 398 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDLXA 562
P N N DED S DN+ S T A + ++ K+G D ++D+ A
Sbjct: 377 PDCLNDNENDEDGSDDNEESENEDGSSDETEFTSASDEMIESFKEGKDIMKDVMA 431
>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 31.9 bits (69), Expect = 0.63
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 380 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 547
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 548 QDL 556
QDL
Sbjct: 253 QDL 255
>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GBOF-1
GI:5923912 from [Tulipa gesneriana]
Length = 390
Score = 31.9 bits (69), Expect = 0.63
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 380 QNIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSL 547
Q Q+P+S+ T E D+ K + + RR +A H+ AE+ RR+ I + L
Sbjct: 193 QKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFL 252
Query: 548 QDL 556
QDL
Sbjct: 253 QDL 255
>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 444
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 419 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQDL 556
T +D + NK+S S RR E H +E++RRD I + +LQ+L
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQEL 282
>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 442
Score = 31.5 bits (68), Expect = 0.83
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 419 TEDEDDSGDNKASALSFKERRR---EAHTQAEQKRRDAIKKGYDSLQDL 556
T +D + NK+S S RR E H +E++RRD I + +LQ+L
Sbjct: 234 TSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQEL 282
>At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 31.5 bits (68), Expect = 0.83
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Frame = +2
Query: 362 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASA---------LSFKERRREA---HTQAE 505
GS G ++ SS E D GDNK A + + RR +A H+ AE
Sbjct: 147 GSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAE 206
Query: 506 QKRRDAIKKGYDSLQDL 556
+ RR+ I + LQDL
Sbjct: 207 RARREKISERMTLLQDL 223
>At2g18300.2 68415.m02134 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 337
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 383 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 550
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 551 DL 556
D+
Sbjct: 216 DI 217
>At2g18300.1 68415.m02133 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;supported by cDNA
gi|20127067|gb|AF488597.1|
Length = 335
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 383 NIHQTPSSSNQNTEDEDDSGDN-KASALSFKERRREA---HTQAEQKRRDAIKKGYDSLQ 550
N+ T +SS+ + E + +N K + + RR +A H+ AE+ RR+ I K LQ
Sbjct: 156 NMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQ 215
Query: 551 DL 556
D+
Sbjct: 216 DI 217
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Frame = +2
Query: 374 SIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQKRRDAIK 529
S++ H + ++ED E++SGD + A S + R E H +E++RRD I
Sbjct: 301 SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
Query: 530 KGYDSLQDL 556
+ +LQ+L
Sbjct: 361 EKMRALQEL 369
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Frame = +2
Query: 374 SIQNIHQTPSSSNQNTED-EDDSGDNKASAL-------SFKERRREAHTQAEQKRRDAIK 529
S++ H + ++ED E++SGD + A S + R E H +E++RRD I
Sbjct: 301 SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRIN 360
Query: 530 KGYDSLQDL 556
+ +LQ+L
Sbjct: 361 EKMRALQEL 369
>At5g48657.1 68418.m06020 defense protein-related weak similarity to
SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis
thaliana}
Length = 245
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 613 LQLCLVCSQTHHSAXQVGXKVLE*IIAFLNCISSFLLCLCVSFPSSLF 470
LQL L+C S+ + K+++ II+ I F +C C+ F +++F
Sbjct: 192 LQLTLLCVGLLFSSMEPKGKLMKMIISLFYIILFFFICFCLIFFNNIF 239
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +2
Query: 362 GSSGSIQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYD 541
G G I++ + PS ED+ D G K S + + ++ + ++K++D K G +
Sbjct: 121 GYGGRIESDYVKPSYGGH--EDDGDDGHKKHSGKDYDDGDEKSKKKEKEKKKDKKKDGNN 178
Query: 542 SLQD 553
S D
Sbjct: 179 SEDD 182
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/54 (18%), Positives = 31/54 (57%)
Frame = +2
Query: 392 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQD 553
++ + ++ ED+ + DNK+ ++ ++ H +++ ++++ KK + L+D
Sbjct: 1072 ESENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLED 1125
>At2g44200.1 68415.m05500 expressed protein
Length = 493
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 389 HQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIK 529
HQ SSS Q ++ E+DSG+ S ++ H + ++ R ++
Sbjct: 191 HQKQSSSRQRSDSEEDSGEENNGRKSHHQKTSGTHDRHYERPRSDLE 237
>At1g76180.1 68414.m08846 dehydrin (ERD14) identical to SP|P42763
Dehydrin ERD14 {Arabidopsis thaliana}
Length = 185
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +2
Query: 377 IQNIHQTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKR 514
++ +H++ SSS+ ++E+E G+ + K+ E + E+K+
Sbjct: 71 LEKLHRSDSSSSSSSEEEGSDGEKRKKKKEKKKPTTEVEVKEEEKK 116
>At1g11880.1 68414.m01370 expressed protein contains Pfam profile
PF04188: Protein of unknown function (DUF409)
Length = 489
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 643 TGCSQLISEG-LQLCLVCSQTHHSAXQVGXKVLE*IIAFLNCISSFLLCLCVSFPSSLFE 467
+GC++ S G L +C QT H A + + +A I+ FL C+C+ P F+
Sbjct: 212 SGCAR--SNGILNAGYICFQTMHRAYEALYQKRRAYLAMQVFIAGFLRCICICLPFVAFQ 269
>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 428
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 446 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDL 556
N+ S + + R E H +E++RRD I + +LQ+L
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQEL 283
>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 430
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 446 NKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDL 556
N+ S + + R E H +E++RRD I + +LQ+L
Sbjct: 247 NQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQEL 283
>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 478
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 401 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQDL 556
+++++ +++ + S S K R E H +E+KRRD I + +LQ+L
Sbjct: 258 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQEL 310
>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 407
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 401 SSSNQNTEDEDDSGDNKASALSFKERRR-EAHTQAEQKRRDAIKKGYDSLQDL 556
+++++ +++ + S S K R E H +E+KRRD I + +LQ+L
Sbjct: 187 TTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQEL 239
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 392 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKK 532
QTPS S Q +++ D A + KE E TQAE+ + + K+
Sbjct: 8 QTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKE 54
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 398 PSSSNQNTEDEDDSGDNKASALSFKERRR--EAHTQAEQKRRDAIKKGYDSLQDL 556
P++ ++ E+ G +A + ++R R E H AE++RR+ I + +LQ L
Sbjct: 227 PATESKLKAREETHGTEEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQL 281
>At3g30725.1 68416.m03909 expressed protein ; expression supported
by MPSS
Length = 111
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 344 ICILVCGSSGSIQNIHQTPSSSNQNT--EDEDDSGDNKASALS 466
+ +L+ + S+ HQ PSSS+ N ++EDD GD A ++
Sbjct: 24 LVLLIALALLSLVCTHQKPSSSSNNNHMDEEDDVGDKDAKPIT 66
>At1g69010.1 68414.m07896 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 311
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 398 PSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQDL 556
PSS+ + D ++KASA+ R H+ EQ+RR I + + L++L
Sbjct: 25 PSSNTTVHSNRDSKENDKASAI------RSKHSVTEQRRRSKINERFQILREL 71
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 392 QTPSSSNQNTEDEDDSGDNKASALSFKERRREAHTQAEQKRRDAIKKGYDSLQD 553
QTPS++ +EDE+ S + S + E TQAE + Y D
Sbjct: 272 QTPSATGSESEDEEVSTSQEYSGETGSSSGSEWETQAENDTESKSESSYPPQND 325
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,246,959
Number of Sequences: 28952
Number of extensions: 336905
Number of successful extensions: 1259
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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