Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C11
         (937 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    28   0.12 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   1.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.4  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +1

Query: 328 PTKRRRCSPFAASPSTSPGLK-----TSESKPSSFGESVSAPVKITPERMAQE 471
           P  +   +P ++S  TSP        TS   P+S   + SAP+ I  +R A +
Sbjct: 13  PAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAYD 65


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +2

Query: 395 QNRNHLHLENPLVHL*KLPQNAWHKRFMMRLNDCIDVDSCAWPTALLHH---AHH 550
           +  N LH  +  +H     QN  H+     +N C  +   +   A+LHH   +HH
Sbjct: 301 EQMNLLHSNDLNMHQQHHQQNMSHEELSAMVNRCHPLSLSSDHQAMLHHNPMSHH 355



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 422 SPNEDGFDSDVFNPGLVLGLAANG 351
           SP    F S + N G+  G+A NG
Sbjct: 43  SPQGASFGSSMLNSGMPGGMAMNG 66


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 605 NVPALVHYSLLNRFV*SVSECSMIRRWLYV 694
           NVP+L+ +   + +V +V   S+I RW ++
Sbjct: 437 NVPSLIIHVSTSAYVATVWINSVINRWKFI 466


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,704
Number of Sequences: 336
Number of extensions: 3636
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26271982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)