Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C11
(937 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical ... 34 0.13
AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like se... 31 0.90
AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical... 31 0.90
AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein. 31 1.6
AF106575-2|AAQ62448.1| 506|Caenorhabditis elegans Hypothetical ... 31 1.6
AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical ... 31 1.6
Z78059-3|CAB01486.3| 345|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical ... 29 4.8
AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical ... 29 4.8
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 29 4.8
Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical pr... 29 6.3
AC006673-10|AAP31433.1| 361|Caenorhabditis elegans Serpentine r... 29 6.3
Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z78418-4|CAB01698.1| 710|Caenorhabditis elegans Hypothetical pr... 28 8.3
>AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical
protein E01A2.6 protein.
Length = 218
Score = 34.3 bits (75), Expect = 0.13
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 607 RARTRALFTFKQVRMICERMLHDQEVALRAE 699
R+ + FT V+MICER+L QE+ LR E
Sbjct: 147 RSSAKREFTMANVQMICERLLKQQEIRLRNE 177
>AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like
serine/threonine kinase protein.
Length = 596
Score = 31.5 bits (68), Expect = 0.90
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 458 AWHKRFMMRLNDCIDVDSCAWPTA--LLHHAHHQ--VDPKETVHRLINQLMAHNVPALVH 625
A+ K F + DC+ D PTA LL ++ + D K VH LI L +VP + H
Sbjct: 354 AYGKSFKTLIRDCLQKDPAKRPTASELLKYSFFKKGKDKKYLVHTLIENLA--SVPVVAH 411
Query: 626 YS 631
+S
Sbjct: 412 HS 413
>AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical
protein Y59A8B.23 protein.
Length = 596
Score = 31.5 bits (68), Expect = 0.90
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 458 AWHKRFMMRLNDCIDVDSCAWPTA--LLHHAHHQ--VDPKETVHRLINQLMAHNVPALVH 625
A+ K F + DC+ D PTA LL ++ + D K VH LI L +VP + H
Sbjct: 354 AYGKSFKTLIRDCLQKDPAKRPTASELLKYSFFKKGKDKKYLVHTLIENLA--SVPVVAH 411
Query: 626 YS 631
+S
Sbjct: 412 HS 413
>AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein.
Length = 167
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 265 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAP 438
KKK +T R+ +SK T ++R SP +P +SP + PSS + P
Sbjct: 58 KKKTKKSTKSRSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEP 117
Query: 439 VKITPERM 462
P+++
Sbjct: 118 TPTVPDKV 125
>AF106575-2|AAQ62448.1| 506|Caenorhabditis elegans Hypothetical
protein K04F1.14b protein.
Length = 506
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 576 TASSISSWPTTCPHSCTIHF*TGSYDL*AN 665
T+SSI +WPTTC C + T DL N
Sbjct: 38 TSSSIKNWPTTCESVCGNLYLTSETDLSEN 67
>AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical
protein T06A4.2 protein.
Length = 167
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 265 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAP 438
KKK +T R+ +SK T ++R SP +P +SP + PSS + P
Sbjct: 58 KKKTKKSTKSRSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEP 117
Query: 439 VKITPERM 462
P+++
Sbjct: 118 TPTVPDKV 125
>Z78059-3|CAB01486.3| 345|Caenorhabditis elegans Hypothetical
protein C34B4.2a protein.
Length = 345
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 343 RCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKIT 450
RC P A+ P+ ++ E+K +S G S + P++ T
Sbjct: 224 RCPPQASIPAYYARVRMEETKAASSGNSTAGPIRAT 259
>AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical
protein ZK484.4a protein.
Length = 919
Score = 29.1 bits (62), Expect = 4.8
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +1
Query: 217 KQIR*HIRKPEDFVGRKK------KMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTS 378
+Q + I+KPE ++ K +++ A R+ D S + P KRRR S ++S
Sbjct: 830 RQFQSLIQKPEAYMESLKQKYIESRVSSAKRMRSNDGASTSSRPAKRRR------SNASS 883
Query: 379 PGLKTSESKPSSFGESVSAPVKI 447
P +T+ S SS +S+ +PVK+
Sbjct: 884 PKKQTASSSASS-TKSLKSPVKL 905
>AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical
protein ZK484.4b protein.
Length = 873
Score = 29.1 bits (62), Expect = 4.8
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +1
Query: 217 KQIR*HIRKPEDFVGRKK------KMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTS 378
+Q + I+KPE ++ K +++ A R+ D S + P KRRR S ++S
Sbjct: 784 RQFQSLIQKPEAYMESLKQKYIESRVSSAKRMRSNDGASTSSRPAKRRR------SNASS 837
Query: 379 PGLKTSESKPSSFGESVSAPVKI 447
P +T+ S SS +S+ +PVK+
Sbjct: 838 PKKQTASSSASS-TKSLKSPVKL 859
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +1
Query: 340 RRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 459
RR SPF++S ST+P +K+ + S F ES+ V +PER
Sbjct: 220 RRRSPFSSSKSTAP-IKSRHYR-SRFSESLEDNVFRSPER 257
>Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical
protein F45H11.3 protein.
Length = 738
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 259 GRKKKMACATLKR--NLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVS 432
G M ATL NL E K T + S AAS ST+P T+ + S G++
Sbjct: 594 GNFHNMIDATLAAFDNLSVEEKIIKETNGKAASNVAASHSTAPTTTTTSGEASGGGQATI 653
Query: 433 APVKITPE 456
+ K++PE
Sbjct: 654 SK-KMSPE 660
>AC006673-10|AAP31433.1| 361|Caenorhabditis elegans Serpentine
receptor, class w protein89 protein.
Length = 361
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 84 KVQNNLFKFKTSDFT-CNLKTNCIFFSCITCMGLNIIFHFLIFVIKTNS 227
+V N +F++ + F L C+F ITC L I+ LI +K ++
Sbjct: 200 QVSNEIFEWNNALFAKLRLYMECVFSKLITCFALPILSGLLITEMKKSA 248
>Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical
protein T03D8.6 protein.
Length = 578
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 406 PSSFGES---VSAPVKITPERMAQEIYDEIKRLHR 501
PSSFG + VSA K+ PE +IY++ K LH+
Sbjct: 285 PSSFGVTQLIVSAMSKLFPEGHKDDIYNDPKVLHK 319
>Z78418-4|CAB01698.1| 710|Caenorhabditis elegans Hypothetical
protein F25D7.5 protein.
Length = 710
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 93 NNLFKFKTSDFTCNLKTNCIFFSC 164
N+ + FK S TC + C FFSC
Sbjct: 260 NDPYMFKISQATCRINYFCKFFSC 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,888,811
Number of Sequences: 27780
Number of extensions: 332448
Number of successful extensions: 1133
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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