Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C09
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    33   0.24 
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           32   0.73 
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    30   2.9  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    29   3.9  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 632  PPSPXXXGVXGGPPXXPGGPXRPXTPXKXXG 724
            PP P   G  GGPP  PG P  P  P    G
Sbjct: 1186 PPPPRGHGGVGGPPTPPGAPAPPMPPGVPGG 1216



 Score = 31.5 bits (68), Expect = 0.97
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 632  PPSPXXXGVXGGPPXXPGGPXRPXTP 709
            P  P   GV GGPP  PGG   P  P
Sbjct: 1205 PAPPMPPGVPGGPPPPPGGRGLPAPP 1230



 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -3

Query: 729  PPPXXXXGVXGLXGPP--GXXGGPPXTPXFXGDGGXRP 622
            P P    G+ G+  PP  G  GGPP  P   G  G  P
Sbjct: 1137 PAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTP 1174


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -3

Query: 729 PPPXXXXGVXGLXGPPGXXGGPPXTPXFXGDGGXRP 622
           PPP           PPG   GPP  P   G GG  P
Sbjct: 349 PPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGP 384


>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 729 PPPXXXXGVXGLXGPPGXXGGPPXTPXFXG 640
           PPP    G      PPG  GGPP  P   G
Sbjct: 615 PPPPRPPGAPPPPPPPGKPGGPPPPPPRPG 644


>11_01_0035 -
           256087-256185,256287-256430,256521-256632,256777-256958,
           257038-257169,257297-258589,259133-259837,260465-260549,
           260604-260650,260810-260900,261838-262101,262195-262309,
           262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 729 PPPXXXXGVXGLXGPPGXXGGPPXTP 652
           PPP    G      PPG  GGPP  P
Sbjct: 920 PPPPRPPGAPPPPPPPGKPGGPPPPP 945


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,256,898
Number of Sequences: 37544
Number of extensions: 136682
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)