Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C09
(914 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 30 3.0
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 30 3.0
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 4.0
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 29 5.2
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 6.9
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 28 9.2
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXGGSPXXP 653
P PP L GG P P GG+P P
Sbjct: 678 PPPPPLPGGAAPPPPPPIGGGAPPPP 703
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 632 PPSPXXXGVXGGPPXXPGGPXRPXTPXKXXGGG 730
PP+P G+ PP PGG P P GGG
Sbjct: 644 PPNPFFGGI---PPPPPGGGMFPPPPPPPPGGG 673
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXGGP--PXTPXFXGDGG 631
P P G+ G GPPG G P P P + G+ G
Sbjct: 473 PGPNGPPGINGPLGPPGEAGPPGNPGGPGYQGNHG 507
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXGGP--PXTPXFXGDGG 631
P P G+ G GPPG G P P P + G+ G
Sbjct: 558 PGPNGPPGINGPLGPPGEAGPPGNPGGPGYQGNHG 592
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG 671
P PP L G GP G PG G
Sbjct: 209 PGPPGLPGAPGPKGPPGTNG 228
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG 671
P PP L G GP G PG G
Sbjct: 294 PGPPGLPGAPGPKGPPGTNG 313
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG 671
P PP L G GP G PG G
Sbjct: 379 PGPPGLPGAPGPKGPPGTNG 398
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPG--XXGGPPXTPXFXGDGG 631
P P G GL GPPG GPP P G G
Sbjct: 443 PGPLGDVGPPGLPGPPGPQMPPGPPGLPGAPGPNG 477
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG 671
P PP L G GP G PG G
Sbjct: 464 PGPPGLPGAPGPNGPPGING 483
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPG--XXGGPPXTPXFXGDGG 631
P P G GL GPPG GPP P G G
Sbjct: 528 PGPLGDVGPPGLPGPPGPQMPPGPPGLPGAPGPNG 562
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG 671
P PP L G GP G PG G
Sbjct: 549 PGPPGLPGAPGPNGPPGING 568
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXGGPPXTPXFXGDGG 631
P P G GL GPPG GPP T G G
Sbjct: 118 PGPQMPPGPPGLPGPPG-PAGPPGTNGELGPPG 149
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXGGP--PXTPXFXGDGG 631
P P G G GPPG G P P P + G+ G
Sbjct: 218 PGPKGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHG 252
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXGGP--PXTPXFXGDGG 631
P P G G GPPG G P P P + G+ G
Sbjct: 303 PGPKGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHG 337
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXGGP--PXTPXFXGDGG 631
P P G G GPPG G P P P + G+ G
Sbjct: 388 PGPKGPPGTNGPLGPPGDVGPPGNPGGPGYQGNHG 422
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = +2
Query: 632 PPSPXXXGVXGGPPXXP-GGPXR--PXTPXKXXGGG 730
PP+P G PP P GGP P P GGG
Sbjct: 178 PPAPPPPGAPAAPPAPPFGGPPSAPPPPPAPPVGGG 213
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG--GSPXXP 653
P PP L G GP G PG G G P P
Sbjct: 223 PGPPGLVGEPGPEGEPGPVGPTGVPGLP 250
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXGGPPXTPXFXGDGG 631
P P G+ GL GPPG GP GD G
Sbjct: 1180 PGPAGKNGINGLDGPPG-PDGPAGVQGVKGDPG 1211
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXG--GPPXTPXFXGDGG 631
P P G GL GP G G GPP P G G
Sbjct: 1670 PGPPGPDGPMGLPGPQGPDGPKGPPGPPGLPGPQG 1704
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = -3
Query: 723 PXXXXGVXGLXGPPGXXG--GPPXTPXFXGDGG 631
P G G+ GPPG G GP P G GG
Sbjct: 1861 PAGPPGRDGIPGPPGRQGGKGPAGIPGIPGPGG 1893
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG 671
P PP GG GP G PG G
Sbjct: 1871 PGPPGRQGGKGPAGIPGIPG 1890
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 708 GVXGLXGPPGXXG--GPPXTPXFXGDGG 631
G+ G+ GPPG G GPP P G G
Sbjct: 654 GMPGMSGPPGRPGPPGPPGPPGPSGPSG 681
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,642,681
Number of Sequences: 59808
Number of extensions: 91636
Number of successful extensions: 762
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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