Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C09
(914 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 32 0.50
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 32 0.50
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 31 1.1
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 31 1.1
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 31 1.5
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 1.5
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 31 1.5
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 31 1.5
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 30 2.7
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 30 2.7
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 3.5
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 3.5
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 3.5
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 4.6
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 4.6
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 29 4.6
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 6.1
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 29 6.1
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 29 6.1
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 6.1
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 6.1
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 29 6.1
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.1
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 8.1
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 8.1
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 28 8.1
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 32.3 bits (70), Expect = 0.50
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 708 GVXGLXGPPGXXG--GPPXTPXFXGDGGXRPL 619
G+ G GPPG G G P +P GD G RPL
Sbjct: 229 GMPGDCGPPGAPGSDGKPGSPGGKGDDGERPL 260
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 32.3 bits (70), Expect = 0.50
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 708 GVXGLXGPPGXXG--GPPXTPXFXGDGGXRPL 619
G+ G GPPG G G P +P GD G RPL
Sbjct: 229 GMPGDCGPPGAPGSDGKPGSPGGKGDDGERPL 260
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXG--GPPXTPXFXGDGG 631
P P G GL GP G G G P TP + G+ G
Sbjct: 577 PGPNGDAGAAGLPGPDGYPGRDGLPGTPGYPGEAG 611
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXG--GPPXTPXFXGDGG 631
P P G GL GP G G G P TP + G+ G
Sbjct: 834 PGPNGDAGAAGLPGPDGYPGRDGLPGTPGYPGEAG 868
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 708 GVXGLXGPPG-XXGGPPXTPXFXGDGG 631
G+ GL GPPG G P TP + G+ G
Sbjct: 677 GIPGLQGPPGDSFPGQPGTPGYKGERG 703
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXG--GPPXTPXFXGDGG 631
P P G GL GP G G G P TP + G+ G
Sbjct: 833 PGPNGDAGAAGLPGPDGYPGRDGLPGTPGYPGEAG 867
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 708 GVXGLXGPPG-XXGGPPXTPXFXGDGG 631
G+ GL GPPG G P TP + G+ G
Sbjct: 676 GIPGLQGPPGDSFPGQPGTPGYKGERG 702
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 733 TPXPPXLXGGXGPXGAPGXXGGSP 662
T PP + GG P G PG GG P
Sbjct: 152 TGPPPLMGGGGDPRGPPGGMGGPP 175
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 733 TPXPPXLXGGXGPXGAPGXXGGSP 662
T PP + GG P G PG GG P
Sbjct: 432 TGPPPLMGGGGDPRGPPGGMGGPP 455
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 617 SKGRXPPSPXXXGVXGGPPXXPGGPXRPXTPXK 715
S GR PP P G P PG P P P +
Sbjct: 163 SGGRGPPGPRGPAGDAGSPGQPGHPGSPGNPGR 195
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 617 SKGRXPPSPXXXGVXGGPPXXPGGPXRPXTPXK 715
S GR PP P G P PG P P P +
Sbjct: 163 SGGRGPPGPRGPAGDAGSPGQPGHPGSPGNPGR 195
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +2
Query: 632 PPSPXXXGVXGGPPXXPGGPXRP-XTPXKXXGG 727
PP P GPP PGGP P TP G
Sbjct: 170 PPGPAGPAGNAGPPGAPGGPGAPGNTPSGGAAG 202
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = -3
Query: 723 PXXXXGVXGLXGPPGXXGGPPXTPXFXGDGGXRP 622
P G G GPPG GG P P GDGG RP
Sbjct: 161 PAGPSGDNGRKGPPGPPGG-PGGPGEGGDGG-RP 192
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG--GSPXXP 653
P PP G GP G+PG G GSP P
Sbjct: 218 PGPPGEAGPQGPPGSPGQPGADGSPGQP 245
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG--GSPXXP 653
P PP G GP G+PG G GSP P
Sbjct: 217 PGPPGEAGPQGPPGSPGQPGADGSPGQP 244
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG--GSPXXP 653
P PP G GP G+PG G GSP P
Sbjct: 218 PGPPGEAGPQGPPGSPGQPGADGSPGQP 245
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 724 PPXLXGGXGPXGAPGXXGG 668
PP GG GP G PG GG
Sbjct: 143 PPGAVGGPGPKGPPGPPGG 161
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 724 PPXLXGGXGPXGAPGXXGG 668
PP GG GP G PG GG
Sbjct: 143 PPGAVGGPGPKGPPGPPGG 161
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Frame = -3
Query: 708 GVXGLXGPPGXXG-----GPPXTPXFXGDGG 631
G+ G GPPG G GPP TP G+ G
Sbjct: 261 GLPGQCGPPGPPGYTPPPGPPGTPGVQGEAG 291
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG-----GSPXXP 653
P PP G GP GAPG G GSP P
Sbjct: 183 PGPPGPDGNAGPAGAPGVPGPDGDAGSPPPP 213
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 632 PPSPXXXGVXGGPPXXPGGPXRPXTPXKXXGG 727
P +P G GGP PGGP P T GG
Sbjct: 51 PGTPGGLGTPGGP-GTPGGPGTPETSGGTAGG 81
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 708 GVXGLXGPPGXXG--GPPXTPXFXGDGG 631
G+ G G PG G G P P F GDGG
Sbjct: 938 GLPGAPGYPGMKGNAGIPGVPGFKGDGG 965
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 708 GVXGLXGPPGXXGGPPXTPXFXGDGG 631
G+ GL GPPG GPP P G+ G
Sbjct: 1460 GMPGLDGPPG-NDGPPGLPGQRGNDG 1484
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 708 GVXGLXGPPGXXG--GPPXTPXFXGDGG 631
G+ G G PG G G P P F GDGG
Sbjct: 937 GLPGAPGYPGMKGNAGIPGVPGFKGDGG 964
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 708 GVXGLXGPPGXXGGPPXTPXFXGDGG 631
G+ GL GPPG GPP P G+ G
Sbjct: 1459 GMPGLDGPPG-NDGPPGLPGQRGNDG 1483
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 708 GVXGLXGPPGXXG--GPPXTPXFXGDGG 631
G+ G G PG G G P P F GDGG
Sbjct: 937 GLPGAPGYPGMKGNAGIPGVPGFKGDGG 964
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 708 GVXGLXGPPGXXGGPPXTPXFXGDGG 631
G+ GL GPPG GPP P G+ G
Sbjct: 1459 GMPGLDGPPG-NDGPPGLPGQRGNDG 1483
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 708 GVXGLXGPPGXXG--GPPXTPXFXGDGG 631
G+ G G PG G G P P F GDGG
Sbjct: 938 GLPGAPGYPGMKGNAGIPGVPGFKGDGG 965
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 708 GVXGLXGPPGXXGGPPXTPXFXGDGG 631
G+ GL GPPG GPP P G+ G
Sbjct: 1460 GMPGLDGPPG-NDGPPGLPGQRGNDG 1484
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 708 GVXGLXGPPGXXG--GPPXTPXFXGDGG 631
G+ G G PG G G P P F GDGG
Sbjct: 974 GLPGAPGYPGMKGNAGIPGVPGFKGDGG 1001
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 708 GVXGLXGPPGXXGGPPXTPXFXGDGG 631
G+ GL GPPG GPP P G+ G
Sbjct: 1496 GMPGLDGPPG-NDGPPGLPGQRGNDG 1520
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 729 PPPXXXXGVXGLXGPPGXXGGPPXTPXFXGDGGXRP 622
P P G G GPPG G TP G+G P
Sbjct: 177 PGPAGPAGGPGPAGPPGPAGADGNTPSGGGEGPAGP 212
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 730 PXPPXLXGGXGPXGAPGXXG 671
P PP GG GP G PG G
Sbjct: 243 PGPPGNPGGIGPRGPPGDPG 262
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 632 PPSPXXXGVXGGPPXXPGGPXRPXTPXK 715
PP P G P PG P P TP K
Sbjct: 106 PPGPAGAPGKPGKPGRPGAPGTPGTPGK 133
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 632 PPSPXXXGVXGGPPXXPGGPXRPXTPXK 715
PP P G P PG P P TP K
Sbjct: 101 PPGPAGAPGKPGKPGRPGAPGTPGTPGK 128
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 632 PPSPXXXGVXGGPPXXPGGPXRPXTPXK 715
PP P G P PG P P TP K
Sbjct: 101 PPGPAGAPGKPGKPGRPGAPGTPGTPGK 128
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +2
Query: 632 PPSPXXXGVXG--GPPXXPGGPXRPXTPXK 715
P P G+ G G P PG P RP TP +
Sbjct: 95 PGHPGRPGLPGRNGKPGVPGAPGRPGTPGR 124
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 632 PPSPXXXGVXGGPPXXPGGPXRPXTP 709
PP P G P PG P RP +P
Sbjct: 144 PPGPQGPTGNSGQPGRPGNPGRPGSP 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,022,625
Number of Sequences: 27780
Number of extensions: 98766
Number of successful extensions: 2809
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2355
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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