Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C09
         (914 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    31   1.4  
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa...    29   4.3  
At4g03120.1 68417.m00425 proline-rich family protein similar to ...    28   7.5  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 623 GRXPPSPXXXGVXGGPPXXPG-GPXRPXTPXKXXGGG 730
           G  PP P   G  GGPP  PG GP  P  P    G G
Sbjct: 677 GGPPPPPPPPG--GGPPPPPGGGPPPPPPPPGALGRG 711


>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|P27048 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Mus musculus}
          Length = 254

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/72 (25%), Positives = 19/72 (26%)
 Frame = +2

Query: 623 GRXPPSPXXXGVXGGPPXXPGGPXRPXTPXKXXGGGXXXXXXXXXXXXXXXXXXXXXXXX 802
           G+ PP P   G  G PP     P  P  P    GG                         
Sbjct: 159 GQMPPQPPFAGQGGPPPPYGMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPPPPHGMQG 218

Query: 803 XPPQXXXAXPPG 838
            PP      PPG
Sbjct: 219 PPPSRPGMPPPG 230


>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
           small nuclear ribonucleoprotein C; contains proline rich
           extensin domains, INTERPRO:IPR002965
          Length = 207

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -3

Query: 729 PPPXXXXGVXGLXGPPGXXGGPPXTPXFXGDGGXRP 622
           PP        G+   PG  GGPP      G GG  P
Sbjct: 129 PPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPP 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,599,216
Number of Sequences: 28952
Number of extensions: 86456
Number of successful extensions: 253
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)