Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C08
(942 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_466| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_8730| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 31 1.8
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 31 1.8
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 4.1
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 7.2
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
>SB_466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 34.3 bits (75), Expect = 0.14
Identities = 23/69 (33%), Positives = 24/69 (34%)
Frame = -2
Query: 650 GXGPXXEKPXKTGPFXGSXPFVGLXXKXFXXGXPXIXGXTEXPPLXXGKPXPXPEXPGPG 471
G G + P T PF GS PF GL P I T PPL P E P
Sbjct: 1 GGGAYGKTPA-TRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERPSAA 59
Query: 470 XXGGGKGXG 444
G G
Sbjct: 60 KQNGNHTYG 68
>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 901
Score = 32.3 bits (70), Expect = 0.59
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = -2
Query: 650 GXGPXXEKPXKTGPFXGSXPFVGLXXKXFXXGXPXIXGXTEXPPLXXGKPXPXPEXP 480
G G + P T PF GS PF GL P I T PPL P E P
Sbjct: 759 GGGAYGKTPA-TRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 814
>SB_29737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 32.3 bits (70), Expect = 0.59
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = -2
Query: 650 GXGPXXEKPXKTGPFXGSXPFVGLXXKXFXXGXPXIXGXTEXPPLXXGKPXPXPEXP 480
G G + P T PF GS PF GL P I T PPL P E P
Sbjct: 1 GGGAYGKTPA-TRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 56
>SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 32.3 bits (70), Expect = 0.59
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = -2
Query: 650 GXGPXXEKPXKTGPFXGSXPFVGLXXKXFXXGXPXIXGXTEXPPLXXGKPXPXPEXP 480
G G + P T PF GS PF GL P I T PPL P E P
Sbjct: 24 GGGAYGKTPA-TRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 79
>SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 32.3 bits (70), Expect = 0.59
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = -2
Query: 650 GXGPXXEKPXKTGPFXGSXPFVGLXXKXFXXGXPXIXGXTEXPPLXXGKPXPXPEXP 480
G G + P T PF GS PF GL P I T PPL P E P
Sbjct: 406 GGGAYGKTPA-TRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 461
>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 32.3 bits (70), Expect = 0.59
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = -2
Query: 650 GXGPXXEKPXKTGPFXGSXPFVGLXXKXFXXGXPXIXGXTEXPPLXXGKPXPXPEXP 480
G G + P T PF GS PF GL P I T PPL P E P
Sbjct: 555 GGGAYGKTPA-TRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 610
>SB_8730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 32.3 bits (70), Expect = 0.59
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = -2
Query: 650 GXGPXXEKPXKTGPFXGSXPFVGLXXKXFXXGXPXIXGXTEXPPLXXGKPXPXPEXP 480
G G + P T PF GS PF GL P I T PPL P E P
Sbjct: 23 GGGAYGKTPA-TRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 78
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 524 PPLXXGKPXPXPEXPGPGXXGG-GKGXGXQKXNPXSPG 414
PPL G+P P PGPG G G + P SPG
Sbjct: 492 PPLDEGRPPLDPGRPGPGRGRGYPPGDRSPRGVPISPG 529
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 524 PPLXXGKPXPXPEXPGPGXXGG-GKGXGXQKXNPXSPG 414
PPL G+P P PGPG G G + P SPG
Sbjct: 258 PPLDEGRPPLDPGRPGPGRGRGYPPGDRSPRGVPISPG 295
>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 29.9 bits (64), Expect = 3.1
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -2
Query: 509 GKPXPXPEXPGPGXXGGGKGXGXQKXNPXSP 417
G P P P PGPG G G G G P P
Sbjct: 186 GPPGP-PGPPGPGLVGSGSGAGAVIAGPPGP 215
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 451 PFPPPXXPGPGXSGXGXGFPXXXGGXSVXPXXXGXP 558
P PP PGPG G G G G P G P
Sbjct: 187 PPGPPGPPGPGLVGSGSGAGAVIAGPPGPPGPPGPP 222
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 29.5 bits (63), Expect = 4.1
Identities = 26/96 (27%), Positives = 26/96 (27%)
Frame = +1
Query: 445 PXPFPPPXXPGPGXSGXGXGFPXXXGGXSVXPXXXGXPXKKXXXXRPTKGXXP*KGPVXW 624
P P PP PG G P G P G K P P G W
Sbjct: 1797 PGPPGPPGPPGAIGWKGNPGNPAGPPGLDGPPGPPGPQGPKGWPGVPGPPGPP--GAYGW 1854
Query: 625 GFSXXGPXPXEXXXKKXXPXXSXGGKPPTGILXXPG 732
P P GGK P GI PG
Sbjct: 1855 KGYPGNPAGPPGRDGIPGPPGRQGGKGPAGIPGIPG 1890
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +2
Query: 632 PXXAPPPXXXXXKNXPPXXQXGANPPXXF*XXXGXSPXENPPXGP 766
P PPP PP + PP G P PP GP
Sbjct: 2170 PPSVPPPMGAPPSGPPPMGAPPSGPPPMGTPPSGHPPMGAPPMGP 2214
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/52 (30%), Positives = 19/52 (36%)
Frame = +2
Query: 644 PPPXXXXXKNXPPXXQXGANPPXXF*XXXGXSPXENPPXGPSLXPXPAXFSG 799
PPP PP G + P F G + + PP P P P F G
Sbjct: 29 PPPPPPYEAPPPPPGPPGPDGPPGFPGPQGPNGPKGPPGLPG-PPGPPGFQG 79
Score = 28.3 bits (60), Expect = 9.5
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = -2
Query: 530 EXPPLXXGKPXPX--PEXPGPGXXGGGKGXGXQKXNPXSPG 414
E PP G P P P PGP G KG P PG
Sbjct: 36 EAPPPPPGPPGPDGPPGFPGPQGPNGPKGPPGLPGPPGPPG 76
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +2
Query: 677 PPXXQXGANPPXXF*XXXGXSPXENPPXGPSLXPXPAXFSGKXXP 811
PP G N P G +P + PP G + P P G P
Sbjct: 921 PPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPP 965
>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = -2
Query: 524 PPLXXGKPXPXPEXPGPGXXGGGKGXGXQKXNPXSPGXGXXFXPXK 387
P G+P P P PG G G G NP +P G P K
Sbjct: 515 PNQGFGRPDPGLGGPNPGLGGPNPGLGGP--NPGTPDSGFGGSPPK 558
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,559,614
Number of Sequences: 59808
Number of extensions: 199237
Number of successful extensions: 584
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2752873431
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -