Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C08
(942 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 31 0.90
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.6
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical pr... 29 6.4
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 29 6.4
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 29 6.4
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 29 6.4
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 6.4
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 6.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.4
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 31.5 bits (68), Expect = 0.90
Identities = 28/84 (33%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Frame = -2
Query: 656 SXGXGPXXEKPXKTGPFXGSXPFVGLXXKXFXXGXPXIXGX-TEXPPLXXGKPXPXPEXP 480
S G GP P TGP G G G P G + P G+P P
Sbjct: 168 SFGGGPGPAGP--TGP-TGDAGAPGQPGHPGSPGNPGRGGQRSRGLPGPSGRPGPQGPAG 224
Query: 479 GPGXXG--GGKGXGXQKXNPXSPG 414
GPG G GG G Q P +PG
Sbjct: 225 GPGQPGQSGGSGTPGQPGAPGAPG 248
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +1
Query: 394 GXXXXPXPGEXGFXFWXPXPFPPPXXPGPGXSGXGXGFPXXXG 522
G P PG G P FPP P PG +G G P G
Sbjct: 431 GGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGGNPFARG 473
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = -2
Query: 584 GLXXKXFXXGXPXIXGXTEXP--PLXXGKPXPXPEXPGPGXXGGGKGXGXQKXNPXSPG 414
GL G P G P P G P P PGP G G NP SPG
Sbjct: 139 GLPGPAGAPGQPGPKGPNGNPGAPAQGGGQGP-PGPPGPAGSAGSPGQAGAPGNPGSPG 196
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = -2
Query: 584 GLXXKXFXXGXPXIXGXTEXP--PLXXGKPXPXPEXPGPGXXGGGKGXGXQKXNPXSPG 414
GL G P G P P G P P PGP G G NP SPG
Sbjct: 139 GLPGPAGVPGQPGPKGPNGNPGAPAQGGGQGP-PGPPGPAGSAGSPGQAGAPGNPGSPG 196
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 557 GXPXIXGXTEXPPLXXGKPXPXPEXPGPGXXGGG 456
G P I G PP G P P P PG GG
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 557 GXPXIXGXTEXPPLXXGKPXPXPEXPGPGXXGGG 456
G P I G PP G P P P PG GG
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 557 GXPXIXGXTEXPPLXXGKPXPXPEXPGPGXXGGG 456
G P I G PP G P P P PG GG
Sbjct: 333 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
>Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical
protein W03G11.1b protein.
Length = 279
Score = 28.7 bits (61), Expect = 6.4
Identities = 31/108 (28%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Frame = +1
Query: 415 PGEXGFXFWXPX-PFPPPXXPGPGXSGXGXGFPXXXGGXSVXPXXXGXPXKKXXXXRP-T 588
P F F P P PP PGP G G P G + P G P + P
Sbjct: 126 PDASQFCFDCPEAPAGPPGRPGPDGENGGAGEP-GRDGLAGRPGARGSPGPRGPSGNPGA 184
Query: 589 KGXXP*KGPVXWGFSXXGPXPXEXXXKKXXPXXSXGGKPPTGILXXPG 732
G GP G S P P + + G K P G PG
Sbjct: 185 DGPAGQLGP--QGGSNVAPSP----AGEPGAPGAQGPKGPPGAAGRPG 226
>Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical
protein W03G11.1a protein.
Length = 332
Score = 28.7 bits (61), Expect = 6.4
Identities = 31/108 (28%), Positives = 35/108 (32%), Gaps = 2/108 (1%)
Frame = +1
Query: 415 PGEXGFXFWXPX-PFPPPXXPGPGXSGXGXGFPXXXGGXSVXPXXXGXPXKKXXXXRP-T 588
P F F P P PP PGP G G P G + P G P + P
Sbjct: 179 PDASQFCFDCPEAPAGPPGRPGPDGENGGAGEP-GRDGLAGRPGARGSPGPRGPSGNPGA 237
Query: 589 KGXXP*KGPVXWGFSXXGPXPXEXXXKKXXPXXSXGGKPPTGILXXPG 732
G GP G S P P + + G K P G PG
Sbjct: 238 DGPAGQLGP--QGGSNVAPSP----AGEPGAPGAQGPKGPPGAAGRPG 279
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 524 PPLXXGKPXPXPEXPGPGXXGGG 456
PP+ G P P P P G GGG
Sbjct: 58 PPIGYGAPPPPPPPPAFGGLGGG 80
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 524 PPLXXGKPXPXPEXPGPGXXGGG 456
PP+ G P P P P G GGG
Sbjct: 58 PPIGYGAPPPPPPPPAFGGLGGG 80
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 524 PPLXXGKPXPXPEXPGPGXXGGG 456
PP+ G P P P P G GGG
Sbjct: 58 PPIGYGAPPPPPPPPAFGGLGGG 80
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 557 GXPXIXGXTEXPPLXXGKPXPXPEXPGPGXXGGGKGXG 444
G P G PP G P P GPG GG G G
Sbjct: 181 GGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPG 218
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 557 GXPXIXGXTEXPPLXXGKPXPXPEXPGPGXXGGGKGXG 444
G P G PP G P P GPG GG G G
Sbjct: 461 GGPPGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPG 498
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/60 (26%), Positives = 19/60 (31%)
Frame = +2
Query: 632 PXXAPPPXXXXXKNXPPXXQXGANPPXXF*XXXGXSPXENPPXGPSLXPXPAXFSGKXXP 811
P PP K PP G+ PP +PP P+ P P G P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/60 (26%), Positives = 19/60 (31%)
Frame = +2
Query: 632 PXXAPPPXXXXXKNXPPXXQXGANPPXXF*XXXGXSPXENPPXGPSLXPXPAXFSGKXXP 811
P PP K PP G+ PP +PP P+ P P G P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/60 (26%), Positives = 19/60 (31%)
Frame = +2
Query: 632 PXXAPPPXXXXXKNXPPXXQXGANPPXXF*XXXGXSPXENPPXGPSLXPXPAXFSGKXXP 811
P PP K PP G+ PP +PP P+ P P G P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,622,535
Number of Sequences: 27780
Number of extensions: 208721
Number of successful extensions: 1125
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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