Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C08
         (942 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02670.1 68416.m00258 proline-rich family protein contains pr...    32   0.63 
At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical...    31   1.5  
At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical...    31   1.5  
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    29   3.4  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   5.9  

>At3g02670.1 68416.m00258 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 217

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
 Frame = +1

Query: 409 PXPGEXGFXFWXPXPFPPPXXPG-PGXSG--XGXGFPXXXGGXSVXPXXXGXP 558
           P PG  GF    P P  P   PG PG  G      FP   GG    P   G P
Sbjct: 68  PIPGSPGFRLPFPFPSSPGGNPGIPGSPGFRLPFPFPSSPGGNPGIPGIPGIP 120


>At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical to
           G-box binding factor 1 SP:P42774 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00170 bZIP
           transcription factor
          Length = 313

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/63 (26%), Positives = 21/63 (33%)
 Frame = +3

Query: 642 PXPP*XXXQKTXPPXFXGGQTPHXXFKXPXGXXXXXXXXXXXXXXXXPPXFPXXPXPAFF 821
           P  P    Q +    + GG TP+  F  P G                PP     P PA +
Sbjct: 23  PPTPYPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHPYMWGAQHHMMPPYGTPVPYPAMY 82

Query: 822 PFG 830
           P G
Sbjct: 83  PPG 85


>At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical to
           G-box binding factor 1 SP:P42774 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00170 bZIP
           transcription factor
          Length = 315

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/63 (26%), Positives = 21/63 (33%)
 Frame = +3

Query: 642 PXPP*XXXQKTXPPXFXGGQTPHXXFKXPXGXXXXXXXXXXXXXXXXPPXFPXXPXPAFF 821
           P  P    Q +    + GG TP+  F  P G                PP     P PA +
Sbjct: 23  PPTPYPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHPYMWGAQHHMMPPYGTPVPYPAMY 82

Query: 822 PFG 830
           P G
Sbjct: 83  PPG 85


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/42 (40%), Positives = 17/42 (40%)
 Frame = +2

Query: 416 PGXGGXXFGXXXLSPPXXPXAPGFRVGXXVFLPXXGXXXFXP 541
           PG GG  FG     P   P  PGF  G   F P  G   F P
Sbjct: 10  PGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGP--GGPGFGP 49


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 877 PNXGWGXAPPXGGGXXPXPP 936
           P  G G  PP GGG  P PP
Sbjct: 684 PPPGGGPPPPPGGGPPPPPP 703


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,146,197
Number of Sequences: 28952
Number of extensions: 178873
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2256303936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)