Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C07
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...   138   7e-34
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.0  

>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score =  138 bits (335), Expect = 7e-34
 Identities = 55/135 (40%), Positives = 96/135 (71%)
 Frame = +3

Query: 141 TYYFVIVGHSDNPIFEMDFIPVTKETKKEDNRHLNQFIAHAALDLVDEHMWKVPNCYLKS 320
           T Y  I+G  DNP++E++  P+ ++  +  N HLNQFI H++LD+VD+  W     Y+K+
Sbjct: 2   TAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQLQWTSNAFYMKT 61

Query: 321 VDKFNQWFVSAFVTASQMRFIIVHDTRNEDSIKNFFTDVYECYIKLMLNPFYKEDTPITM 500
           +D+F++ ++SA+VT S MRF+++H  ++ D+IK FF +++E YIK +++PFY+ + PI  
Sbjct: 62  IDQFHEMYISAYVTPSNMRFMLLHQNQSADNIKLFFQELHELYIKTLMSPFYQPNQPIRS 121

Query: 501 PAFEKKVQFLGKKYL 545
            AF+ KV+ + ++YL
Sbjct: 122 QAFDLKVRSIARRYL 136


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 375  RFIIVHDTRNEDSIKNFFTDVYEC 446
            +FI+V  TR ++S+   F+D  +C
Sbjct: 1422 KFILVTSTRQKESLSKIFSDSEDC 1445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,351
Number of Sequences: 5004
Number of extensions: 63302
Number of successful extensions: 174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)