Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C07
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264... 109 4e-24
02_04_0598 + 24216556-24216636,24217871-24217956,24218083-24218251 69 5e-12
09_06_0129 - 21028528-21028575,21029559-21029654,21029989-210300... 34 0.17
11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800... 33 0.22
07_03_1708 + 28868695-28869144,28869235-28869333,28869388-288694... 32 0.68
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 28 8.3
>04_04_0426 +
25125590-25125670,25126171-25126256,25126423-25126471,
25126547-25126675,25126973-25127055,25127791-25127959,
25128038-25128103
Length = 220
Score = 109 bits (261), Expect = 4e-24
Identities = 62/148 (41%), Positives = 85/148 (57%), Gaps = 10/148 (6%)
Frame = +3
Query: 132 MAGTYYFVIVGHSDNPIFEMDFIPVTKETKKEDNRHLNQFIAHAALDLVDEHMWKVPNCY 311
MA T F IV +D PI+E + V KKED + +QFI HAALD+V + W +
Sbjct: 1 MASTACFAIVSKNDIPIYEAE---VGSAPKKEDLAYQHQFILHAALDVVQDLAWSTNAMF 57
Query: 312 LKSVDKFNQWFVSA----------FVTASQMRFIIVHDTRNEDSIKNFFTDVYECYIKLM 461
LKSVD+FN VS F + RF+++HD+R+ED IK+FF +V+E YIK+
Sbjct: 58 LKSVDRFNDLVVSVYFYLYNNIVFFNLMTHARFMLLHDSRSEDGIKSFFQEVHELYIKIF 117
Query: 462 LNPFYKEDTPITMPAFEKKVQFLGKKYL 545
LNP Y + IT F+ KV+ L + L
Sbjct: 118 LNPLYLPGSRITSSHFDTKVRALARSSL 145
>02_04_0598 + 24216556-24216636,24217871-24217956,24218083-24218251
Length = 111
Score = 68.9 bits (161), Expect = 5e-12
Identities = 36/81 (44%), Positives = 49/81 (60%)
Frame = +3
Query: 132 MAGTYYFVIVGHSDNPIFEMDFIPVTKETKKEDNRHLNQFIAHAALDLVDEHMWKVPNCY 311
MA T FVIV +D PI+E + V K+ED + +QFI HAALD+V + W +
Sbjct: 1 MASTACFVIVSKNDIPIYEAE---VGSAPKREDQAYQHQFILHAALDVVQDLAWATNTMF 57
Query: 312 LKSVDKFNQWFVSAFVTASQM 374
LKSVD+F+ VS +VTA +
Sbjct: 58 LKSVDRFDDLVVSVYVTAGHI 78
>09_06_0129 -
21028528-21028575,21029559-21029654,21029989-21030070,
21030394-21030472,21030946-21031042,21031506-21031593,
21033326-21033687
Length = 283
Score = 33.9 bits (74), Expect = 0.17
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Frame = +3
Query: 153 VIVGHSDNPIFEMDFIPVTKETKKEDNRHLNQFIAHAALDLVDEHMWK-------VPNCY 311
+I +NP++ F T+ +D L+ + H +LD++DE + + +
Sbjct: 145 IICESVNNPLYLQSF------TEADDALKLHH-VVHCSLDVIDERVNNPKRNAPALNETF 197
Query: 312 LKSVDKFNQWFVSAFVTASQMRFIIVH---DTRNEDSIKNFFTDVYECYIKLMLNPFYKE 482
L + + V ++T ++++FI+V D ++ D+ +NFF + Y+ + NPF+
Sbjct: 198 LGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVKDADA-RNFFRKFHAAYVDAVSNPFHVP 256
Query: 483 DTPITMPAF 509
I +F
Sbjct: 257 GKKIASRSF 265
>11_06_0234 +
21574380-21575197,21576131-21576190,21578320-21580053,
21581859-21582006
Length = 919
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 283 SSTRSRAAWAMNWFKCLLSSFFVSLVTGMKSISKIGLSECPTITK*YVPAMINFPLI 113
SS++S A + W K L F +L TGM + + ECP +P +++F ++
Sbjct: 540 SSSQSSTARRVAWHKSLNQDKFDNLTTGMAQLRSLNAIECPIS---MIPPLVSFEIL 593
>07_03_1708 +
28868695-28869144,28869235-28869333,28869388-28869460,
28869534-28869976
Length = 354
Score = 31.9 bits (69), Expect = 0.68
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 5/138 (3%)
Frame = +3
Query: 117 NGKFIMAGTYYFVIVGHSDNPIFEMDFIPVTKETKKEDNRHLNQF-----IAHAALDLVD 281
NG + G +Y V G+ P F F V K+ N + + H++L +
Sbjct: 201 NGLLVPQGKFYLVDAGYGAKPGFLPPFRAVRYHLKEWGNNPVQNEKELFNLRHSSLRVTV 260
Query: 282 EHMWKVPNCYLKSVDKFNQWFVSAFVTASQMRFIIVHDTRNEDSIKNFFTDVYECYIKLM 461
E + V K +D +F + I+H+ D I F TD + +
Sbjct: 261 ERAFGVLKRRFKILDDATPFFPYPTQVDIVVACCIIHNWVINDGIDQFITDPLDLISETT 320
Query: 462 LNPFYKEDTPITMPAFEK 515
PF + + M F +
Sbjct: 321 TEPFGQANDHALMVQFRQ 338
>06_03_0095 -
16575938-16576585,16577028-16577219,16577294-16577392,
16577496-16577618,16577717-16577929,16578143-16578251,
16578339-16578427,16578604-16578880,16578974-16579084,
16579160-16580508,16581218-16581631
Length = 1207
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 168 SDNPIFEMDFIPVTKETKKEDNRHLNQFIAHAALDLVDEHMWKVPNCYLKSVDKFN 335
+D+ +F+ P ++ ++E RH+N++ LV + + N Y+K +KFN
Sbjct: 623 ADSVMFKR-LAPTGRKFEEETKRHINEYSDSGLRTLVLAYRFLDENEYMKFSEKFN 677
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,571,506
Number of Sequences: 37544
Number of extensions: 322840
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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