Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C07
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.52 
SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_58153| Best HMM Match : RepA_C (HMM E-Value=7.7)                    29   6.4  
SB_27410| Best HMM Match : Peptidase_A24 (HMM E-Value=9.3)             29   6.4  
SB_19630| Best HMM Match : Peptidase_A24 (HMM E-Value=9.3)             29   6.4  
SB_29286| Best HMM Match : Avirulence (HMM E-Value=2.3)                28   8.5  

>SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 354 FVTASQMRFIIVHDTRNEDSIKNFFTDVYECYIKLML-NPFYKEDTPITMPAFEKKVQ 524
           F + + ++FI++ D R +  +      +YE Y    L NPFY  D PI    F+  +Q
Sbjct: 140 FQSMTGLKFIVLTDPR-QVGMDGLLKKIYELYGDFALKNPFYSLDMPIRCELFDLNLQ 196


>SB_33568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 270 DLVDEHMWKVPNCYLKSVDKFNQWFVSAFVTASQMRF 380
           ++ D   + VP CYLKS ++     +  F  AS+  F
Sbjct: 666 EMTDLRNFSVPRCYLKSTEEITSTQIHIFADASEAAF 702


>SB_58153| Best HMM Match : RepA_C (HMM E-Value=7.7)
          Length = 426

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 279 DEHMWKVPNCYLKSVDKFNQWFVSAFVTASQMRFIIVHDTRNEDSIKNFFTDVY 440
           D H W+  N   ++ D FN+   S F   +Q      +++   DSI     DV+
Sbjct: 136 DWHWWRTANILTRTADAFNELRNSPFSWVNQSFSNFYNNSGGRDSIPTSRADVW 189


>SB_27410| Best HMM Match : Peptidase_A24 (HMM E-Value=9.3)
          Length = 156

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -1

Query: 509 KSRHCDWRILFVKWIQHQFNVTLIDICEEIFYTVFISCIMNYYEPHLACCNKSRH 345
           + RHC +R++ +  +     V +IDI   + + V I  +M  Y  H  CC++ RH
Sbjct: 54  RHRHC-YRVIVIAIVIVIVIVIVIDI---VIFIVAIVIVM--YHRHCHCCHRHRH 102


>SB_19630| Best HMM Match : Peptidase_A24 (HMM E-Value=9.3)
          Length = 128

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -1

Query: 509 KSRHCDWRILFVKWIQHQFNVTLIDICEEIFYTVFISCIMNYYEPHLACCNKSRH 345
           + RHC +R++ +  +     V +IDI   + + V I  +M  Y  H  CC++ RH
Sbjct: 26  RHRHC-YRVIVIAIVIVIVIVIVIDI---VIFIVAIVIVM--YHRHCHCCHRHRH 74


>SB_29286| Best HMM Match : Avirulence (HMM E-Value=2.3)
          Length = 662

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 260 MGYELVQMSVIFFLCFFSNRNEIHFKDRIVRMSDYNKI 147
           +GY L ++S+ FF C  S  NE+  +    RMS  N++
Sbjct: 199 VGYRLNKLSLRFFKCRMSPLNELSLRLFKCRMSPLNEL 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,353,691
Number of Sequences: 59808
Number of extensions: 402733
Number of successful extensions: 792
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)