Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C07
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97552-2|AAB52862.1|  141|Caenorhabditis elegans Human sedl (spo...   168   4e-42
U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...    33   0.35 
Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical ...    28   9.8  

>U97552-2|AAB52862.1|  141|Caenorhabditis elegans Human sedl
           (spondyloepiphysealdysplasia tarda) related protein 1
           protein.
          Length = 141

 Score =  168 bits (409), Expect = 4e-42
 Identities = 77/136 (56%), Positives = 98/136 (72%), Gaps = 1/136 (0%)
 Frame = +3

Query: 144 YYFVIVGHSDNPIFEMDFIPVTKETKK-EDNRHLNQFIAHAALDLVDEHMWKVPNCYLKS 320
           +YF I+GH D PIFEMDF    K+TK+ E  RHLN +I HAALD+VDEH       YLK 
Sbjct: 6   FYFAIIGHCDQPIFEMDFPVGEKKTKESEGTRHLNHYIGHAALDIVDEHALTTSQMYLKM 65

Query: 321 VDKFNQWFVSAFVTASQMRFIIVHDTRNEDSIKNFFTDVYECYIKLMLNPFYKEDTPITM 500
           VDKFN+W+VSAFVTAS++RFI++H  R ++ IK FF ++YE YIK  +NPFY+ D  I  
Sbjct: 66  VDKFNEWYVSAFVTASRIRFIMLHTHRADEGIKQFFQEMYETYIKHAMNPFYEIDDVIES 125

Query: 501 PAFEKKVQFLGKKYLT 548
           PAFE+K    G+KYL+
Sbjct: 126 PAFEQKATLYGRKYLS 141


>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 372 MRFIIVHDTRNEDSIKNFFTDVYECYIKLML-NPFYKEDTPITMPAFEKKVQFL 530
           ++F+++    +  +  +  + +YE Y    L NPFY  D PI    F++ ++ L
Sbjct: 158 VKFVVITSAASNIAADSLLSKMYELYTDFALKNPFYSIDMPIRAQKFDEAIKTL 211


>Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical
           protein R10E11.5 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = +3

Query: 165 HSD---NPI-FEMDFIPVTKETKKEDNRHL 242
           HSD    PI F    +P+TK  KKE+NRH+
Sbjct: 111 HSDFKAAPIRFNAPPVPITKPAKKEENRHV 140


>AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical
           protein F58E1.4 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 389 NYYEPHLACCNKSRHEPLVEFVNRF*ITIRYFPHV 285
           N Y P+L+C      EP ++ V+   +T  + P +
Sbjct: 389 NRYSPNLSCIAVMNDEPAIKIVSNLNLTYAFLPKI 423


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,619,386
Number of Sequences: 27780
Number of extensions: 345005
Number of successful extensions: 782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)