Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C05
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)              143   2e-34
SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_32666| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score =  143 bits (346), Expect = 2e-34
 Identities = 55/85 (64%), Positives = 73/85 (85%)
 Frame = +2

Query: 395 LYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDWARDHRMHHKYSET 574
           L LC G G+T GAHRLWAH+++KA+ PLR+++ + N++A Q+ + +W+RDHR+HHKYSET
Sbjct: 12  LSLCRGYGVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSET 71

Query: 575 DADPHNATRGFFFSHIGWLLLRKHP 649
           DADPHNA RGFFFSH+GWL+ RKHP
Sbjct: 72  DADPHNAKRGFFFSHVGWLMQRKHP 96


>SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 155 FQGKMPPQRKQEASWVLYETDANDLPEDAPP 247
           F  +     + + SW+ Y TD N LP  APP
Sbjct: 150 FSTRSSSHEQTQYSWLPYPTDLNMLPPYAPP 180


>SB_32666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 155 FQGKMPPQRKQEASWVLYETDANDLPEDAPP 247
           F  +     + + SW+ Y TD N LP  APP
Sbjct: 7   FSTRSSSHEQTQYSWLPYPTDLNMLPPYAPP 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,811,909
Number of Sequences: 59808
Number of extensions: 565329
Number of successful extensions: 1647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)