Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C05
(857 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ... 86 2e-17
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ... 83 2e-16
At1g06360.1 68414.m00672 fatty acid desaturase family protein si... 81 7e-16
At3g15850.1 68416.m02005 fatty acid desaturase family protein si... 79 4e-15
At3g15870.1 68416.m02007 fatty acid desaturase family protein si... 77 1e-14
At1g06090.1 68414.m00638 fatty acid desaturase family protein si... 75 5e-14
At1g06120.1 68414.m00641 fatty acid desaturase family protein si... 75 6e-14
At1g06100.1 68414.m00639 fatty acid desaturase family protein si... 72 4e-13
At1g06350.1 68414.m00671 fatty acid desaturase family protein si... 69 4e-12
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote... 31 0.98
At5g67330.1 68418.m08491 NRAMP metal ion transporter 4 (NRAMP4) ... 30 2.3
At4g19865.1 68417.m02911 kelch repeat-containing F-box family pr... 29 3.0
At3g17460.1 68416.m02229 PHD finger family protein contains Pfam... 29 4.0
At2g23150.1 68415.m02765 NRAMP metal ion transporter 3 (NRAMP3) ... 29 4.0
At3g10630.1 68416.m01278 glycosyl transferase family 1 protein c... 29 5.2
At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase, p... 28 6.9
At4g01890.1 68417.m00247 glycoside hydrolase family 28 protein /... 28 6.9
At1g47240.1 68414.m05230 NRAMP metal ion transporter 2, putative... 28 6.9
At3g50190.1 68416.m05488 expressed protein contains Pfam profile... 28 9.1
At3g32280.1 68416.m04116 hypothetical protein 28 9.1
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 28 9.1
>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
[Arabidopsis thaliana]
Length = 307
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/107 (36%), Positives = 59/107 (55%)
Frame = +2
Query: 311 FILHVGGVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPLRILL 490
F +H + + F + A+W T +F Y GLGIT HR AH+S+K L LL
Sbjct: 48 FTVHSLALLAPFYFTWSALWVTFLF----YTIGGLGITVSYHRNLAHRSFKVPKWLEYLL 103
Query: 491 TIFNTIAFQDAVVDWARDHRMHHKYSETDADPHNATRGFFFSHIGWL 631
+A Q +DW HR HH++++++ DPH+ GF+FSH+ W+
Sbjct: 104 AYCALLAIQGDPIDWVSTHRYHHQFTDSERDPHSPKEGFWFSHLLWI 150
>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
GI:2970034 from [Arabidopsis thaliana]
Length = 305
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/92 (38%), Positives = 49/92 (53%)
Frame = +2
Query: 356 FKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDW 535
F W A+ +Y GLGIT HR AH+S+K L +A Q +DW
Sbjct: 57 FNFTWPALRVALIVYTVGGLGITVSYHRNLAHRSFKVPKWLEYFFAYCGLLAIQGDPIDW 116
Query: 536 ARDHRMHHKYSETDADPHNATRGFFFSHIGWL 631
HR HH+++++D DPH+ GF+FSH+ WL
Sbjct: 117 VSTHRYHHQFTDSDRDPHSPNEGFWFSHLLWL 148
>At1g06360.1 68414.m00672 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 81.4 bits (192), Expect = 7e-16
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Frame = +2
Query: 260 SAEKRPW---KIVWRNVILFFILHVGGVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAG 430
S EKRP+ + W ++I + + + L F W F LY + L IT
Sbjct: 17 SKEKRPYIHREWSWADIIRALTV-INVHFLCLLAPFNYKWEALRFGFVLYALTSLSITFS 75
Query: 431 AHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDWARDHRMHHKYSETDADPHNATRGFF 610
HR AH+S+K L L F A Q +DW HR HH+++++D DPH+ GF+
Sbjct: 76 YHRNLAHRSFKLPKWLEYPLAYFAVFALQGDPLDWVSIHRFHHQFTDSDRDPHSPIEGFW 135
Query: 611 FSHIGWL 631
FSH+ W+
Sbjct: 136 FSHVWWI 142
>At3g15850.1 68416.m02005 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 371
Score = 79.0 bits (186), Expect = 4e-15
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +2
Query: 356 FKAMWRTSIFAIFLYLCSGL-GITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVD 532
F+ WR A LY+ +GL GIT HR +HK++K L L A Q +D
Sbjct: 121 FQFNWRAVSVAFGLYIVTGLLGITLSFHRNLSHKAFKLPKWLEYLFAYCGAQALQGNPID 180
Query: 533 WARDHRMHHKYSETDADPHNATRGFFFSHIGWL 631
W HR HH++ ++D DPH+ GF+FSH+ W+
Sbjct: 181 WVSTHRYHHQFCDSDRDPHSPLDGFWFSHMNWM 213
>At3g15870.1 68416.m02007 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 292
Score = 77.4 bits (182), Expect = 1e-14
Identities = 35/98 (35%), Positives = 55/98 (56%)
Frame = +2
Query: 338 GGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQ 517
G L +A W +F +++ +G+ IT HR +H+S+ L L +AFQ
Sbjct: 43 GSILLQLEAFW---VFPWLVFI-NGICITLSYHRNLSHRSFDLPKWLEYLFAYGGVLAFQ 98
Query: 518 DAVVDWARDHRMHHKYSETDADPHNATRGFFFSHIGWL 631
++W +HR HHK+ ET DPH+ T+GF+FSH+ W+
Sbjct: 99 GDPIEWVSNHRYHHKHCETQRDPHSPTQGFWFSHMAWI 136
>At1g06090.1 68414.m00638 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]
Length = 299
Score = 75.4 bits (177), Expect = 5e-14
Identities = 32/92 (34%), Positives = 46/92 (50%)
Frame = +2
Query: 356 FKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDW 535
F W F + L + + L IT HR HKS+K L A Q +DW
Sbjct: 51 FNYKWEALRFGVILAIVTSLSITFSYHRNLTHKSFKLPKWLEYPFAYSALFALQGHPIDW 110
Query: 536 ARDHRMHHKYSETDADPHNATRGFFFSHIGWL 631
HR HH+++++D DPH+ GF+FSH+ W+
Sbjct: 111 VSTHRFHHQFTDSDRDPHSPIEGFWFSHVFWI 142
>At1g06120.1 68414.m00641 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]; supported
by cDNA:gi_12083275_gb_AF332434.1_AF332434
Length = 299
Score = 74.9 bits (176), Expect = 6e-14
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +2
Query: 290 WRNVILFFILHVGGVYGGYLFL-FKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKA 466
W V + + VG V+ L F W FA + + + L IT HR H+S+K
Sbjct: 28 WTRVDVMRVSAVGAVHLLCLLAPFNYTWEAFRFAAMVGISTNLSITFSYHRNLTHRSFKL 87
Query: 467 RLPLRILLTIFNTIAFQDAVVDWARDHRMHHKYSETDADPHNATRGFFFSHIGWL 631
L A Q +DW HR HH+++++D DPH+ GF+FSH+ W+
Sbjct: 88 PKWLEYPFAYSALFALQGHPIDWVSTHRFHHQFTDSDRDPHSPIEGFWFSHVFWI 142
>At1g06100.1 68414.m00639 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/92 (34%), Positives = 47/92 (51%)
Frame = +2
Query: 356 FKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDW 535
F W F I L + + L IT HR H+S+K L +A Q +DW
Sbjct: 51 FNYKWEAFRFGIILAILTNLCITFSYHRNLTHRSFKLPKWLEYPFAYSALLALQGDPLDW 110
Query: 536 ARDHRMHHKYSETDADPHNATRGFFFSHIGWL 631
HR HH+++++D DPH+ GF+FSH+ W+
Sbjct: 111 VSIHRFHHQFTDSDRDPHSPIEGFWFSHVLWI 142
>At1g06350.1 68414.m00671 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 300
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/92 (33%), Positives = 45/92 (48%)
Frame = +2
Query: 356 FKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDW 535
F W F + L+ + L IT HR +H+S+K L A Q +DW
Sbjct: 52 FNFKWEALRFGLVLFALTTLSITFSFHRNLSHRSFKIPKWLEYPWAYSAVFALQGDPMDW 111
Query: 536 ARDHRMHHKYSETDADPHNATRGFFFSHIGWL 631
HR HH+++++D DPH+ G FSHI W+
Sbjct: 112 VSIHRFHHQFTDSDRDPHSPKEGLLFSHILWI 143
>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor protein
kinase-like protein GI:10177178 from [Arabidopsis
thaliana]
Length = 1045
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 92 SVRERLSVFQCSVKLIIISTLFQGKMPPQRKQEASWVLYETDANDLPEDAP 244
S+ + L Q L++ G +PP+ +S V+++ ANDL D P
Sbjct: 256 SIPKELGKLQKITSLLLWGNSLSGVIPPEISNCSSLVVFDVSANDLTGDIP 306
>At5g67330.1 68418.m08491 NRAMP metal ion transporter 4 (NRAMP4)
identical to metal transporter Nramp4 [Arabidopsis
thaliana] gi|6468014|gb|AAF13279; member of the natural
resistance-associated macrophage protein (NRAMP) metal
transporter family, PMID:11500563
Length = 512
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 329 GVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAH 436
G GY ++ MW T+I + L + LG+ G H
Sbjct: 79 GAIAGYSLIWLLMWATAIGLLIQLLSARLGVATGRH 114
>At4g19865.1 68417.m02911 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 393
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +2
Query: 239 APPHVPPSAEKRPWKIVWRNVILFFILHVGGVYGGYLFLFKAMWRTSIFAIFLYLC-SGL 415
+PPH PPS+ ++ +++ + + +Y L L +R+ + + LY S L
Sbjct: 17 SPPHSPPSSSSPSLSLLPEEIVVHCLARISRLYYPTLSLVSKSFRSILSSTELYATRSHL 76
Query: 416 GITAGAHR--LWAHKSYKARLPLRILLTIFNTIA 511
G T LW SY+ LR+L+ T+A
Sbjct: 77 GSTEQCVYLCLW-DPSYQFPQWLRLLVNPNRTLA 109
>At3g17460.1 68416.m02229 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 198
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Frame = -2
Query: 472 QPSFIGLVCPKSVRASCDTQPRTQVQKYGEYRSPP--HGFEKEQVSSINTTDMQNKEQNH 299
Q I + CP S SC TQP + +PP F + S+ N T N
Sbjct: 61 QARIICVNCPSSTHLSCSTQPPSSSAASSSSSAPPPASSFTCQPCSNPNFTFFPKSRVNE 120
Query: 298 VSPHNLP 278
P P
Sbjct: 121 DVPDETP 127
>At2g23150.1 68415.m02765 NRAMP metal ion transporter 3 (NRAMP3)
identical to metal transporter Nramp3 [Arabidopsis
thaliana] gi|6468012|gb|AAF13278; member of the natural
resistance-associated macrophage protein (NRAMP) metal
transporter family, PMID:11500563
Length = 509
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 329 GVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAH 436
G GY L+ MW T++ + L + LG+ G H
Sbjct: 83 GAVAGYSLLWLLMWATAMGLLVQLLSARLGVATGRH 118
>At3g10630.1 68416.m01278 glycosyl transferase family 1 protein
contains Pfam glycosyl transferase, group 1 family
protein domain PF00534; C-terminal portion similar to
mannosyltransferase GB:BAA28328 [Escherichia coli]
Length = 487
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +2
Query: 254 PPSAEKRPWK---IVWRNVILFFILHV 325
PP KRPWK IV+ + ILF +L +
Sbjct: 4 PPDRSKRPWKFSTIVYSSSILFLLLSI 30
>At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 476
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +2
Query: 203 LYETDANDLPE--DAPPHVPPSA-EKRPWK 283
L TD + P DAPPH+PP + RP+K
Sbjct: 23 LLRTDFSTSPSIADAPPHIPPFVHQPRPYK 52
>At4g01890.1 68417.m00247 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:7381227;
contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 468
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 137 IIISTLFQGKMPPQRKQEASWVLYETDANDLPEDAPPHVPPSAEKRPWKIVWR 295
+I ST+F G P R S+ ++ D +P D P P S KR W +R
Sbjct: 112 MIRSTIFTG---PCR----SYQYFQVDGTIVPRDGPKSWPSSLNKRQWLAFYR 157
>At1g47240.1 68414.m05230 NRAMP metal ion transporter 2, putative
(NRAMP2) similar to metal transporter Nramp3
[Arabidopsis thaliana] gi|6468012|gb|AAF13278; member of
the natural resistance-associated macrophage protein
(NRAMP) metal transporter family, PMID:11500563
Length = 530
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 329 GVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAH 436
G GY L+ MW T++ + L + +G+ G H
Sbjct: 95 GAIAGYSLLWLLMWATAMGLLIQMLSARVGVATGRH 130
>At3g50190.1 68416.m05488 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 463
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Frame = +1
Query: 298 RDSVLYSACRWCLWRIPVPFQSHVEDFYIRHIFVL---------VFGVGYHSWRA 435
RD+ S + C++R+P+ FQ ++ Y H L + + YH WRA
Sbjct: 86 RDAATTSWDKLCIYRVPLSFQKSDKNSYFPHTVSLGPYHHGDEHLRPMDYHKWRA 140
>At3g32280.1 68416.m04116 hypothetical protein
Length = 474
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/66 (25%), Positives = 36/66 (54%)
Frame = -3
Query: 402 KYKNMANIEVLHMALKRNRYPP*TPPTCRIKNRITFLHTIFHGLFSAEGGTWGGASSGRS 223
K+ + ++ ++++AL+ N +KN +T ++ H + GG+ GG++SG+
Sbjct: 143 KFNGLVDVPIVYLALEENV----------VKNDLTLRSSLKHVII---GGSSGGSNSGKG 189
Query: 222 LASVSY 205
LA+ Y
Sbjct: 190 LANDLY 195
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 267 SAEGGTWGGASSGRSLASVSYNT 199
S EGGT+GG S G S SY +
Sbjct: 560 SMEGGTFGGQSMGGQAGSASYQS 582
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,496,562
Number of Sequences: 28952
Number of extensions: 389591
Number of successful extensions: 1262
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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