Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C03
         (892 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.60 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   7.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   7.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   7.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   9.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.8  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 367 RLRRPSHSSLVGGAAASNRHLSTLCRLPHVVFGDGL 260
           ++   + S  +G     + HLS L RL + +FG GL
Sbjct: 841 KMETKAQSVALGKICTLHHHLSKLIRLFNEIFGHGL 876


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 589 PHVHMLRSGERRGPLGSRRPEVRPGELHLP 678
           PH H       + P G RR   RPG +  P
Sbjct: 24  PHQHQHYGAAVQVPQGGRRRAARPGVVTTP 53


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 580 PGNVCRVCPG 551
           PG  C+ CPG
Sbjct: 101 PGRCCKTCPG 110


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +2

Query: 320 CSRTAHQTAMRGSTKPSPQLATLTPKVRAFVERSAALCQPKHVH 451
           C     Q  +  S+     LA +TP V    +  +++C P   H
Sbjct: 113 CESLNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGH 156


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +2

Query: 320 CSRTAHQTAMRGSTKPSPQLATLTPKVRAFVERSAALCQPKHVH 451
           C     Q  +  S+     LA +TP V    +  +++C P   H
Sbjct: 113 CESLNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGH 156


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +2

Query: 320 CSRTAHQTAMRGSTKPSPQLATLTPKVRAFVERSAALCQPKHVH 451
           C     Q  +  S+     LA +TP V    +  +++C P   H
Sbjct: 113 CESLNTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGH 156


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 281 VRKTAQCAQVAIGCSRTAHQTAMRGSTKPSP 373
           +RK+   A +    S  +HQ A +   +P+P
Sbjct: 232 IRKSELLAGLQSSGSSRSHQPATKSKPRPAP 262


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 747 IPFSMGPVGSLLSKIG 794
           + FSMG  GSLLS  G
Sbjct: 47  VSFSMGGHGSLLSPSG 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,711
Number of Sequences: 336
Number of extensions: 3970
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)