Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C03
(892 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 87 2e-17
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 87 2e-17
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 64 1e-10
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 31 0.95
SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74) 31 1.3
SB_29428| Best HMM Match : Peptidase_C35 (HMM E-Value=3.5) 30 2.2
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032) 30 2.9
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 3.8
SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006) 29 5.1
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 29 6.7
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7) 29 6.7
SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4) 28 8.8
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51) 28 8.8
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 87.0 bits (206), Expect = 2e-17
Identities = 36/59 (61%), Positives = 49/59 (83%)
Frame = +3
Query: 687 YEKAVSDRFPGCMRGRTMXVIPFSMGPVGSLLSKIGVEITDSPYVVFSMRVMTRIGAXI 863
++K +R+PGCM GRTM V+PFSMGPVGS +SKIG+++TDS YVV MR+MTR+G+ +
Sbjct: 114 HKKLYEERYPGCMTGRTMYVLPFSMGPVGSPISKIGIQLTDSEYVVCCMRIMTRMGSHV 172
Score = 82.6 bits (195), Expect = 4e-16
Identities = 42/100 (42%), Positives = 57/100 (57%)
Frame = +2
Query: 386 LTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDP 565
L KV+ FVE +A L P +H+CDGS+ E +A L K++NC+ TDP
Sbjct: 14 LPKKVQEFVEENAKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENCYAVFTDP 73
Query: 566 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPE 685
DVARVESRTFIC+ + D VP + G+ L ++S E
Sbjct: 74 QDVARVESRTFICTKCKDDAVPHFK-GKVGKLARWMSLEE 112
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 87.0 bits (206), Expect = 2e-17
Identities = 39/94 (41%), Positives = 56/94 (59%)
Frame = +2
Query: 383 TLTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTD 562
+L KV+ FV + LCQP +H+CDGS E ++ +L K +N ++ RTD
Sbjct: 154 SLPKKVQDFVTENVELCQPDKIHICDGSPEENQSLVDFLVKKGTCFKLTKRENSYVVRTD 213
Query: 563 PADVARVESRTFICSDRESDVVPSARAGQKSALG 664
P DVARVES+TFIC++ E D VP + G+ +G
Sbjct: 214 PGDVARVESKTFICTENERDAVPDFKKGKDGVVG 247
Score = 52.0 bits (119), Expect = 6e-07
Identities = 21/36 (58%), Positives = 31/36 (86%)
Frame = +3
Query: 756 SMGPVGSLLSKIGVEITDSPYVVFSMRVMTRIGAXI 863
+MGPVGS ++KIG+++TDS YVV MR+MTR+G+ +
Sbjct: 321 NMGPVGSPIAKIGIQLTDSEYVVCCMRIMTRMGSHV 356
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 64.5 bits (150), Expect = 1e-10
Identities = 28/42 (66%), Positives = 36/42 (85%)
Frame = +3
Query: 738 MXVIPFSMGPVGSLLSKIGVEITDSPYVVFSMRVMTRIGAXI 863
M V+PFSMGPVGS +SKIG+E+TDS YVV MR+MTR+G+ +
Sbjct: 1 MYVMPFSMGPVGSPISKIGIELTDSEYVVCCMRIMTRMGSHV 42
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 31.5 bits (68), Expect = 0.95
Identities = 24/82 (29%), Positives = 36/82 (43%)
Frame = -2
Query: 780 EEIPQGPSRTVSRTSCDLSCNQGICRTLPSRNSGGEM*FPRADFWPARAEGTTSLSRSEH 601
E+IP+ + SRTS + QG T S + F R++ E S + SE
Sbjct: 368 EKIPRSADKQASRTSSSTATIQGATGTQASNATTPTATFSRSE----DIENVESSTPSEA 423
Query: 600 MNVRDSTRATSAGSVRANQQLS 535
++ T+ T S+R N LS
Sbjct: 424 ASISVDTQTTKPASLRVNVPLS 445
>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
Length = 668
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 682 RGGDVVPQGGLLAGASRGDHVALPIG 605
R GDV+P GG + RGD V + IG
Sbjct: 526 RSGDVIPLGGTAGDSERGDEVPVLIG 551
>SB_29428| Best HMM Match : Peptidase_C35 (HMM E-Value=3.5)
Length = 151
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 598 HMLRSGERRGPLGSRRPEVRPGELHLP-PGITRRQCPTD 711
H+L SG R+G + PE+ PG +P P + + PTD
Sbjct: 79 HVLHSGRRQGKVYCTGPEMIPGPEAIPGPEMIPKSTPTD 117
>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
Length = 227
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 601 YERAGFNPGNVCRVCPGQPTVIVFGQ 524
Y ++ FNP N CRVC + V GQ
Sbjct: 32 YAKSLFNPNNFCRVCNANTSKRVLGQ 57
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -1
Query: 778 RDPTGPIENGITXIVRPLMQPGNLSDTAFS*FRGGDVVPQGGLLAGASRGDHVALPIGAY 599
R TG I+ + I+ L +P S G +VP GG + +RG+H P A+
Sbjct: 831 RGTTGRIQLERSGIMERLFEPDQTDYFTVSASDVGKMVPGGGRVNNPNRGEHYIFPCRAW 890
>SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1038
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 578 RVESRTFICSDRESDVVPSARAGQKSALGNYISPPELREGSVRQIPWLH 724
R++ ++ SD +SD+ + ++G+Y+ PPE + ++ PW H
Sbjct: 364 RIKKKSSSDSDNKSDLDGHDEDEDEDSVGDYVEPPE--DIPLQDEPWFH 410
>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
Length = 1103
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 692 EGSVRQIPWLHERSHDVRDTVLDGPCGISSLEDWCGNHGFALRGFFY 832
E +R++ R + DTV G GI S E W + +R F +
Sbjct: 304 EEKIRRVKHAKNRRKQISDTVYKGELGIGSYEPWQLEDFYFVRDFVW 350
>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 820
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 546 GWPGQTRQTLPGLNPARSYAP-IGRATWSPRLAPARS 653
G PGQ R+++ + P R AP I R T SPR P R+
Sbjct: 41 GTPGQRRKSV-AVTPPRLSAPHIQRGTASPRSVPPRT 76
>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
Length = 703
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +2
Query: 563 PADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPELREGSVRQIPWLHERSHDV 742
P ++ S T+ E +PS R+G+ S+ G I+ + R I W+ + V
Sbjct: 576 PIVISPSSSETYSPPREEEQCLPSIRSGEMSSTGEKINNNNEFNSTFRSIDWITGDPYKV 635
Query: 743 RD 748
++
Sbjct: 636 KE 637
>SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)
Length = 373
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 546 GWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARS 653
G PGQ R+++ P S I R T SPR P R+
Sbjct: 41 GTPGQRRKSVAVTPPRLSTPHIQRGTASPRSVPPRT 76
>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
Length = 287
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 595 RAGFNPGNVCRVCPGQPTVIVFGQ 524
++ FNP N CR+C + V GQ
Sbjct: 121 KSSFNPNNFCRLCNANTSNCVLGQ 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,473,852
Number of Sequences: 59808
Number of extensions: 517860
Number of successful extensions: 1493
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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