Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C03
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical pr... 85 6e-17
Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical pr... 85 6e-17
Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical pr... 85 6e-17
Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical pr... 85 6e-17
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 82 5e-16
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 82 5e-16
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 82 5e-16
AF125442-11|AAD12791.1| 624|Caenorhabditis elegans Hypothetical... 53 3e-07
AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical... 38 0.013
U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 rela... 28 7.8
AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell fac... 28 7.8
>Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical
protein R11A5.4b protein.
Length = 582
Score = 85.0 bits (201), Expect = 6e-17
Identities = 39/66 (59%), Positives = 46/66 (69%)
Frame = +3
Query: 654 PPWGTTSPPRNYEKAVSDRFPGCMRGRTMXVIPFSMGPVGSLLSKIGVEITDSPYVVFSM 833
P G P + + RFPGCM GR M VIPFSMGPVG LSKIG+++TDS YVV SM
Sbjct: 142 PIMGHWLAPEDLATELDSRFPGCMAGRIMYVIPFSMGPVGGPLSKIGIQLTDSNYVVLSM 201
Query: 834 RVMTRI 851
R+MTR+
Sbjct: 202 RIMTRV 207
Score = 75.4 bits (177), Expect = 5e-14
Identities = 34/101 (33%), Positives = 58/101 (57%)
Frame = +2
Query: 386 LTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDP 565
L KV+ F+ A L +P+ + +CDGS+ EA +L Y+N ++ RTDP
Sbjct: 53 LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 112
Query: 566 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPEL 688
DVARVES+T++ + + D V + G + +G++++P +L
Sbjct: 113 KDVARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDL 153
>Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical
protein R11A5.4d protein.
Length = 618
Score = 85.0 bits (201), Expect = 6e-17
Identities = 39/66 (59%), Positives = 46/66 (69%)
Frame = +3
Query: 654 PPWGTTSPPRNYEKAVSDRFPGCMRGRTMXVIPFSMGPVGSLLSKIGVEITDSPYVVFSM 833
P G P + + RFPGCM GR M VIPFSMGPVG LSKIG+++TDS YVV SM
Sbjct: 106 PIMGHWLAPEDLATELDSRFPGCMAGRIMYVIPFSMGPVGGPLSKIGIQLTDSNYVVLSM 165
Query: 834 RVMTRI 851
R+MTR+
Sbjct: 166 RIMTRV 171
Score = 75.4 bits (177), Expect = 5e-14
Identities = 34/101 (33%), Positives = 58/101 (57%)
Frame = +2
Query: 386 LTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDP 565
L KV+ F+ A L +P+ + +CDGS+ EA +L Y+N ++ RTDP
Sbjct: 17 LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 76
Query: 566 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPEL 688
DVARVES+T++ + + D V + G + +G++++P +L
Sbjct: 77 KDVARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDL 117
>Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical
protein R11A5.4c protein.
Length = 587
Score = 85.0 bits (201), Expect = 6e-17
Identities = 39/66 (59%), Positives = 46/66 (69%)
Frame = +3
Query: 654 PPWGTTSPPRNYEKAVSDRFPGCMRGRTMXVIPFSMGPVGSLLSKIGVEITDSPYVVFSM 833
P G P + + RFPGCM GR M VIPFSMGPVG LSKIG+++TDS YVV SM
Sbjct: 75 PIMGHWLAPEDLATELDSRFPGCMAGRIMYVIPFSMGPVGGPLSKIGIQLTDSNYVVLSM 134
Query: 834 RVMTRI 851
R+MTR+
Sbjct: 135 RIMTRV 140
Score = 65.3 bits (152), Expect = 6e-11
Identities = 28/85 (32%), Positives = 50/85 (58%)
Frame = +2
Query: 434 QPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDPADVARVESRTFICSDR 613
+P+ + +CDGS+ EA +L Y+N ++ RTDP DVARVES+T++ +
Sbjct: 2 RPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDPKDVARVESKTWMVTKN 61
Query: 614 ESDVVPSARAGQKSALGNYISPPEL 688
+ D V + G + +G++++P +L
Sbjct: 62 KYDTVTHTKEGVEPIMGHWLAPEDL 86
>Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical
protein R11A5.4a protein.
Length = 654
Score = 85.0 bits (201), Expect = 6e-17
Identities = 39/66 (59%), Positives = 46/66 (69%)
Frame = +3
Query: 654 PPWGTTSPPRNYEKAVSDRFPGCMRGRTMXVIPFSMGPVGSLLSKIGVEITDSPYVVFSM 833
P G P + + RFPGCM GR M VIPFSMGPVG LSKIG+++TDS YVV SM
Sbjct: 142 PIMGHWLAPEDLATELDSRFPGCMAGRIMYVIPFSMGPVGGPLSKIGIQLTDSNYVVLSM 201
Query: 834 RVMTRI 851
R+MTR+
Sbjct: 202 RIMTRV 207
Score = 75.4 bits (177), Expect = 5e-14
Identities = 34/101 (33%), Positives = 58/101 (57%)
Frame = +2
Query: 386 LTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDP 565
L KV+ F+ A L +P+ + +CDGS+ EA +L Y+N ++ RTDP
Sbjct: 53 LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 112
Query: 566 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPEL 688
DVARVES+T++ + + D V + G + +G++++P +L
Sbjct: 113 KDVARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDL 153
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 82.2 bits (194), Expect = 5e-16
Identities = 36/70 (51%), Positives = 45/70 (64%)
Frame = +3
Query: 654 PPWGTTSPPRNYEKAVSDRFPGCMRGRTMXVIPFSMGPVGSLLSKIGVEITDSPYVVFSM 833
P G + + RFPGCM GR M V+P+SMGP+G LSK G+E+TDSPYVV M
Sbjct: 129 PIMGQWMSEEQFGVELDSRFPGCMAGRPMYVVPYSMGPIGGPLSKNGIELTDSPYVVLCM 188
Query: 834 RVMTRIGAXI 863
R MTR+G +
Sbjct: 189 RTMTRMGTKV 198
Score = 69.3 bits (162), Expect = 3e-12
Identities = 36/99 (36%), Positives = 54/99 (54%)
Frame = +2
Query: 380 ATLTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLART 559
A+L+PKV+ FV A L P +++CDGS+ E L Y+N +L RT
Sbjct: 38 ASLSPKVQRFVAEKAELMNPAGIYICDGSQKEYDDIVDKLVERGVLTPLKAYENNYLCRT 97
Query: 560 DPADVARVESRTFICSDRESDVVPSARAGQKSALGNYIS 676
DP DVARVES+T++ + + D V G + +G ++S
Sbjct: 98 DPRDVARVESKTWMVTKDKYDSVCHTPDGVRPIMGQWMS 136
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 82.2 bits (194), Expect = 5e-16
Identities = 36/70 (51%), Positives = 45/70 (64%)
Frame = +3
Query: 654 PPWGTTSPPRNYEKAVSDRFPGCMRGRTMXVIPFSMGPVGSLLSKIGVEITDSPYVVFSM 833
P G + + RFPGCM GR M V+P+SMGP+G LSK G+E+TDSPYVV M
Sbjct: 19 PIMGQWMSEEQFGVELDSRFPGCMAGRPMYVVPYSMGPIGGPLSKNGIELTDSPYVVLCM 78
Query: 834 RVMTRIGAXI 863
R MTR+G +
Sbjct: 79 RTMTRMGTKV 88
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 82.2 bits (194), Expect = 5e-16
Identities = 36/70 (51%), Positives = 45/70 (64%)
Frame = +3
Query: 654 PPWGTTSPPRNYEKAVSDRFPGCMRGRTMXVIPFSMGPVGSLLSKIGVEITDSPYVVFSM 833
P G + + RFPGCM GR M V+P+SMGP+G LSK G+E+TDSPYVV M
Sbjct: 129 PIMGQWMSEEQFGVELDSRFPGCMAGRPMYVVPYSMGPIGGPLSKNGIELTDSPYVVLCM 188
Query: 834 RVMTRIGAXI 863
R MTR+G +
Sbjct: 189 RTMTRMGTKV 198
Score = 69.3 bits (162), Expect = 3e-12
Identities = 36/99 (36%), Positives = 54/99 (54%)
Frame = +2
Query: 380 ATLTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLART 559
A+L+PKV+ FV A L P +++CDGS+ E L Y+N +L RT
Sbjct: 38 ASLSPKVQRFVAEKAELMNPAGIYICDGSQKEYDDIVDKLVERGVLTPLKAYENNYLCRT 97
Query: 560 DPADVARVESRTFICSDRESDVVPSARAGQKSALGNYIS 676
DP DVARVES+T++ + + D V G + +G ++S
Sbjct: 98 DPRDVARVESKTWMVTKDKYDSVCHTPDGVRPIMGQWMS 136
>AF125442-11|AAD12791.1| 624|Caenorhabditis elegans Hypothetical
protein H04M03.1 protein.
Length = 624
Score = 52.8 bits (121), Expect = 3e-07
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = +3
Query: 711 FPGCMRGRTMXVIPFSMGPVGSLLSKIGVEITDSPYVVFSMRVMTRI 851
F M GRTM V+PFSMG +GS + +GV+ITD P +V ++R R+
Sbjct: 173 FDCSMSGRTMYVVPFSMGTIGSRRAVVGVQITDDPVLVLNLRTTFRV 219
>AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical
protein F07B7.14 protein.
Length = 401
Score = 37.5 bits (83), Expect = 0.013
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = +3
Query: 549 WPGQTRQTLP--GLNPARSYAPIGRATWSPRLAPARSP-PWGTTSPPRNYEKA-VSDRFP 716
WP R+ P P + +TW A R P P ++ P N K +S R
Sbjct: 48 WPASCRRPEPRSSSQPKENLPEENISTWP---ASCRRPEPRSSSQPKENPPKEKISTRLA 104
Query: 717 GCMRGRTMXVIPFSMGPVGSLLS 785
C R RT +P S+GP G + S
Sbjct: 105 SCRRPRTSSSLPLSLGPSGDIKS 127
>U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 related
protein 1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +3
Query: 531 NTITVGWP---GQTRQTLP-GLNPAR--SYAPIGRATWSPRLAPARSPP 659
N++ + WP G + L G A+ S +PI RAT SPR P+ PP
Sbjct: 393 NSLEISWPIVQGASGYFLQIGFGDAKEQSVSPIKRATTSPRKQPSIVPP 441
>AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell factor
1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +3
Query: 531 NTITVGWP---GQTRQTLP-GLNPAR--SYAPIGRATWSPRLAPARSPP 659
N++ + WP G + L G A+ S +PI RAT SPR P+ PP
Sbjct: 393 NSLEISWPIVQGASGYFLQIGFGDAKEQSVSPIKRATTSPRKQPSIVPP 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,596,023
Number of Sequences: 27780
Number of extensions: 379414
Number of successful extensions: 1256
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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