Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C02
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 171 6e-43
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 170 1e-42
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 33 0.30
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 31 1.2
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 31 1.2
11_01_0570 - 4529901-4529962,4530725-4530800,4531247-4531306,453... 29 3.7
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 29 3.7
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 29 4.9
08_02_0101 + 12374476-12376683 29 6.4
06_03_0493 + 21402536-21404599 29 6.4
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 28 8.5
05_04_0167 + 18668004-18668287,18668961-18669043,18669346-186694... 28 8.5
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 171 bits (416), Expect = 6e-43
Identities = 80/134 (59%), Positives = 101/134 (75%)
Frame = +1
Query: 91 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 270
+ VE P P+L G MD+ ALQ V+K + H GLV GL EAAKA++K A LCVLAE+
Sbjct: 4 ETPVEAPPAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 271 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFG 450
CD+ Y KLV+ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KDFG
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFG 122
Query: 451 EETPALDVLKDYLK 492
EE+ L++++DY+K
Sbjct: 123 EESEGLNIVQDYVK 136
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 170 bits (414), Expect = 1e-42
Identities = 79/134 (58%), Positives = 101/134 (75%)
Frame = +1
Query: 91 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 270
+ VE P P+L G MD+ ALQ V+K + H GLV GL EAAKA++K A LCVLAE+
Sbjct: 4 ETPVETPAAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 271 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFG 450
CD+ Y KLV+ALC EH + LV V + K LGEWAGLCKID +GKARK+VGCSCVV+KD+G
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYG 122
Query: 451 EETPALDVLKDYLK 492
EE+ L++++DY+K
Sbjct: 123 EESEGLNIVQDYVK 136
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +1
Query: 196 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 375
L G+ E K++ + Q LC++A N V LC E IP V V + + L AG
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLAT-AG 103
Query: 376 LCK 384
K
Sbjct: 104 TTK 106
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 196 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 375
L G+ E K++ + LCV+A N V LC E IP + V + + L AG
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLAT-AG 103
Query: 376 LCK 384
K
Sbjct: 104 TTK 106
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 169 APLAVLHSRPCCYPTRWGWWGPRLQHQP 86
+PLA +RPC +PT W P L+ P
Sbjct: 7 SPLAAAAARPCAFPTPWRCRSPPLRRLP 34
>11_01_0570 -
4529901-4529962,4530725-4530800,4531247-4531306,
4533797-4533959,4534037-4534091,4534314-4534366,
4534881-4534980,4535556-4535703,4535964-4536056
Length = 269
Score = 29.5 bits (63), Expect = 3.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 162 LQCYIHVHVVTRQDGVGGDLDF 97
++CY H H++T+ +G GGD +
Sbjct: 213 IECYEHNHLITKVEGDGGDSSY 234
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 202 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 363
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 130 YGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLG 183
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 202 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 363
+GL +++ +A L V+A + D + ALC + +IP V +LG
Sbjct: 115 YGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLG 168
>08_02_0101 + 12374476-12376683
Length = 735
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 145 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENC--DEAAYKKLVQALC 312
V + L+ L+TA + L+HGL A + + + A++C D Y +V LC
Sbjct: 131 VLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLC 188
>06_03_0493 + 21402536-21404599
Length = 687
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 151 VALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIP 330
V E+L T LIHG ++ E A L + D + Y L+Q LCN H++
Sbjct: 394 VRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGL---ELDISLYGALIQGLCNVHKLD 450
Query: 331 LVK 339
K
Sbjct: 451 EAK 453
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 262 AENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 363
A CDE +K + +CN + L + D+N +G
Sbjct: 316 AFKCDEYTVRKCSKVICNRSKNSLYRFDSNASIG 349
>05_04_0167 +
18668004-18668287,18668961-18669043,18669346-18669434,
18670085-18670158,18670234-18670284,18671486-18671553,
18671666-18672234,18672333-18672383
Length = 422
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 331 VESDVRCTEPEQVSCMRLHHSSQPKHIVLLA 239
+ES ++ TEP + + LH +S+P +VL A
Sbjct: 268 IESSMQRTEPYKFPSLGLHSNSKPSSVVLSA 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,382
Number of Sequences: 37544
Number of extensions: 338195
Number of successful extensions: 1035
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -