Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C02
(873 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 183 1e-46
SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 31 1.2
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 183 bits (446), Expect = 1e-46
Identities = 84/119 (70%), Positives = 99/119 (83%)
Frame = +1
Query: 85 MADVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 264
M+D E + T +G MD+N ALQEVLKTALIH GL GLHEAAK+LDKR+A LC+L+
Sbjct: 1 MSDAEGDDTTQQPAAGGAMDINTALQEVLKTALIHDGLSRGLHEAAKSLDKREAHLCILS 60
Query: 265 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 441
NCDEA Y KLV+ALC EH IPL+KVD++KKLGEWAGLCKIDK+GKARK+VGCSCVV+K
Sbjct: 61 NNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLGEWAGLCKIDKEGKARKVVGCSCVVVK 119
>SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 39.1 bits (87), Expect = 0.005
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +1
Query: 232 DKRQAVLCVLAEN--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 375
D LCVL EN D + +L++A C E+ IP+VKVD+++KL AG
Sbjct: 2 DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53
>SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 39.1 bits (87), Expect = 0.005
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +1
Query: 232 DKRQAVLCVLAEN--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 375
D LCVL EN D + +L++A C E+ IP+VKVD+++KL AG
Sbjct: 2 DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 202 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 366
+G++ ++ ++A L V+A + D + ALC + Q+P V +LG+
Sbjct: 47 YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 101
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 202 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 366
+G++ ++ ++A L V+A + D + ALC + Q+P V +LG+
Sbjct: 138 YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 192
>SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 354 FVVVNLDQWNLMFVAQSLNKFLVCGFITVLSQNT*YCLPLVKSFSGFV 211
F VNL +W++ F A +L+++ +C F TV C V F F+
Sbjct: 256 FQAVNLSRWSMCFQAVNLSRWFMC-FQTVNLSRWFMCFQAVNLFRWFM 302
>SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 438 DDNTGAADNFPCLAILVNLAETSPFSKLF 352
DD +D +PC+ I+VN++ T +K F
Sbjct: 10 DDGLTCSDVYPCVEIMVNISSTGSETKKF 38
>SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 742
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = +1
Query: 208 LHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKK----LGEWAG 375
LH+ LD A + +L N + Q L P+ DN + + ++ G
Sbjct: 363 LHQRGVNLDTTTANMTILTSNIIQQLNNVSFQGLTG----PVSFTDNQRNGIIAIKQFQG 418
Query: 376 LCKIDKDGKARKIVGC 423
+ +DK K R ++GC
Sbjct: 419 MAPLDKPAKIRLVIGC 434
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 190 GGLVHGLHEAAK--ALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQI 327
G L LHE +K +L R A+ C ++E + +++V N H I
Sbjct: 167 GSLHFVLHETSKEISLPDRVAIFCDVSEGLEFLKSRRIVHCFLNSHSI 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,146,514
Number of Sequences: 59808
Number of extensions: 406433
Number of successful extensions: 1046
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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