Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_C02
(873 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 156 2e-38
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 156 2e-38
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 156 2e-38
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 148 4e-36
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 148 4e-36
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 32 0.44
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 31 0.76
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 31 1.0
At1g51920.1 68414.m05853 expressed protein 31 1.3
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 30 1.8
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 30 1.8
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac... 30 2.3
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 29 4.1
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 28 9.4
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 156 bits (378), Expect = 2e-38
Identities = 69/118 (58%), Positives = 94/118 (79%)
Frame = +1
Query: 136 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 315
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 316 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 489
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 156 bits (378), Expect = 2e-38
Identities = 69/118 (58%), Positives = 94/118 (79%)
Frame = +1
Query: 136 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 315
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 316 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 489
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 156 bits (378), Expect = 2e-38
Identities = 69/118 (58%), Positives = 94/118 (79%)
Frame = +1
Query: 136 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 315
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 316 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 489
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 148 bits (359), Expect = 4e-36
Identities = 70/135 (51%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Frame = +1
Query: 88 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 264
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 265 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 444
E+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 445 FGEETPALDVLKDYL 489
FGEET AL ++ ++
Sbjct: 127 FGEETTALSIVNKHI 141
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 148 bits (359), Expect = 4e-36
Identities = 70/135 (51%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Frame = +1
Query: 88 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 264
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 265 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 444
E+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 445 FGEETPALDVLKDYL 489
FGEET AL ++ ++
Sbjct: 127 FGEETTALSIVNKHI 141
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 196 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 375
L G+ E K++ + Q LCV+A N + LC E +P V V + + L + AG
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQ-AG 109
Query: 376 LCK 384
K
Sbjct: 110 ATK 112
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +1
Query: 166 VLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVD 345
V+K G L +GL + K + + + L E+ ++ +KK+ + P+++
Sbjct: 1364 VVKLVAEDGSLRNGLEFSEK--ESTVSKMLKLDESKEKEEHKKIRKPTEERSNAPVIEKQ 1421
Query: 346 NNKKLGEWAGLCKIDKDGKARKIVG 420
NKK E KID+ GK ++I G
Sbjct: 1422 GNKKNAEEEMQDKIDRRGKNQEIKG 1446
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 169 LKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDN 348
LKT ++HG + G + ++ R L L++N + V L N H + + + +
Sbjct: 1008 LKTLILHGNNMEGTFPMKELINLRNLELLDLSKN----QFVGPVPDLANFHNLQGLDMSD 1063
Query: 349 NKKLGEWAGLCKI 387
NK G GLC++
Sbjct: 1064 NKFSGSNKGLCQL 1076
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3
Query: 406 LPCHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQP 260
+P P S R PI A CC+P P+ S RC V+ HHS P
Sbjct: 33 IPRAPISSRR--PICPACVCCEPAPLGSCCRCCASPIVT-QTHHHSQSP 78
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 202 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 363
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 202 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 363
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 129 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182
>At5g65130.1 68418.m08193 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor
Length = 277
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 298 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 423
++++CN +PL +++ K E +G K +K+ + +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 229 LDKRQAVLCVLAENCDEAAYKKLVQALCNE 318
L RQA++C L+E+C ++Y K VQ NE
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINE 382
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/72 (27%), Positives = 25/72 (34%)
Frame = -3
Query: 400 CHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQPKHIVLLASCQEL* 221
C C+ C+ QP C CQ E+ C V C R +H C L
Sbjct: 203 CPVCRYCQQQPENSVCCVCQ--TTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSL- 259
Query: 220 RLREDRAQDHHG 185
L R D+ G
Sbjct: 260 ELETQRVWDYAG 271
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,627,064
Number of Sequences: 28952
Number of extensions: 270295
Number of successful extensions: 739
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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