Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_C01
         (869 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.34 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   7.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -2

Query: 391  GMNVPSRSFKVATSFTLPFSLASFSSAILVLYCSSVRSPVSRFCLP 254
            G   PS+   V+ S ++P  +ASF       Y   V  P     LP
Sbjct: 1289 GEGQPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLP 1334


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 581 THNEKLVSPHGAVVNLVLDRFSY 513
           T+N  LV+P+G  V  ++D  SY
Sbjct: 511 TYNRHLVAPNGDHVISLIDEISY 533


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 666 RKTPSPGLPVKSCRPSPPDR 607
           RK   PG+P+ S   S PD+
Sbjct: 828 RKMEPPGVPLNSTPRSTPDK 847



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 672  RGRKTPSPGLPVKSCRPSPPDRCDGMYST 586
            +G  + S G+P+K     PP    G  ST
Sbjct: 1095 QGSSSSSEGVPLKGTAVPPPSGSSGPGST 1123



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 599 PSHRSGGDGLQDFTGR 646
           P H   GDG+ DF+ R
Sbjct: 196 PMHSPPGDGILDFSKR 211


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 585 LWSTFHRTDLVETACRISLADLGLEFFDLFLIH 683
           +W ++ RT +  T     +  L + FF  F++H
Sbjct: 123 IWKSYKRTQIFITCELFFVILLWISFFLNFMLH 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,605
Number of Sequences: 336
Number of extensions: 3781
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)