Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B23
         (973 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    54   6e-06
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.003
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.13 
UniRef50_UPI0000DC179F Cluster: UPI0000DC179F related cluster; n...    39   0.22 
UniRef50_Q62486 Cluster: Unknown protein; n=1; Mus musculus|Rep:...    34   6.3  
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    34   6.3  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   6.3  

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 54.0 bits (124), Expect = 6e-06
 Identities = 28/47 (59%), Positives = 32/47 (68%)
 Frame = +3

Query: 396 INKLTTTIAFILCFRFRAEVWEVFSALMNRPTRGERRFAYWALFRFL 536
           +++LT      L  RF      V +ALMNRPTRGERRFAYWALFRFL
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYWALFRFL 47


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.003
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +2

Query: 272 DPDMIRYIDEFGQTTTRMQ 328
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.5 bits (88), Expect = 0.13
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -2

Query: 522 APNTQTASPRALADSLMQ 469
           APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_UPI0000DC179F Cluster: UPI0000DC179F related cluster; n=2;
           Rattus norvegicus|Rep: UPI0000DC179F UniRef100 entry -
           Rattus norvegicus
          Length = 213

 Score = 38.7 bits (86), Expect = 0.22
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +1

Query: 658 KRQQKAMNXKKGRRCWRFLHRLRPPLTASTKKSTPQGQKVGRT 786
           +R++K    +KGR   RF HRLR P  A   + TP G  V RT
Sbjct: 44  RRERKGGTARKGRSGPRFAHRLRRPKCAQNLQVTPDGYPVNRT 86


>UniRef50_Q62486 Cluster: Unknown protein; n=1; Mus musculus|Rep:
           Unknown protein - Mus musculus (Mouse)
          Length = 601

 Score = 33.9 bits (74), Expect = 6.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 610 RLSTXSGDXXRKXHVSKRQQKAMNXKKGRRCWRFLHRLRPPLTASTKKSTPQGQK 774
           R S+   +  R   V  R Q     ++ RRCW   H L  P T ++ +  P GQ+
Sbjct: 482 RSSSLDQEGCRHAQVPLRCQSLPYGQQRRRCWTLTHTLMFPNTENSSREQPPGQR 536


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 33.9 bits (74), Expect = 6.3
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 540 SLTRCARSFGCGERYQ 587
           SLTR ARSFGCGERY+
Sbjct: 41  SLTRYARSFGCGERYR 56


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 6.3
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -1

Query: 430 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 266
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,537,636
Number of Sequences: 1657284
Number of extensions: 9753528
Number of successful extensions: 20692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20688
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 90631794594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)