Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B22
         (947 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.3  
SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)                     28   9.6  
SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)                     28   9.6  

>SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 895

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 86  IPKHVNIIVLLIVFTR*DAVKFLNYQPVMIIAIQTLIFFRQVSFNRV 226
           +PK + +  +L +F   D   + NY+PV ++ + +  FF +V + R+
Sbjct: 749 VPKKLKVARVLPLFKTGDQAFYANYRPVSVLPVFSK-FFEKVVYKRL 794


>SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 86  IPKHVNIIVLLIVFTR*DAVKFLNYQPVMIIAIQTLIFFRQVSFNRV 226
           +PK + +  +L +F   D   + NY+PV ++ + +  FF +V + R+
Sbjct: 259 VPKKLKVAGVLPLFKTGDQAFYANYRPVSVLPVFSK-FFEKVVYKRL 304


>SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
          Length = 317

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = +2

Query: 86  IPKHVNIIVLLIVFTR*DAVKFLNYQPVMIIAIQTLIFFRQVSFNRV 226
           +PK + I  ++ +F   D   ++NY+PV ++ I +  F  ++ ++R+
Sbjct: 153 VPKELKIARVIPLFKSCDQALYVNYRPVSVLPIFSK-FLEKIMYDRL 198


>SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
          Length = 243

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = +2

Query: 86  IPKHVNIIVLLIVFTR*DAVKFLNYQPVMIIAIQTLIFFRQVSFNRV 226
           +PK + I  ++ +F   D   ++NY+PV ++ I +  F  ++ ++R+
Sbjct: 79  VPKELKIARVIPLFKSCDQALYVNYRPVSVLPIFSK-FLEKIMYDRL 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,316,349
Number of Sequences: 59808
Number of extensions: 181645
Number of successful extensions: 334
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2776707833
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)