Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B21
         (943 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   4.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   7.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +2

Query: 494 PPXXGGGXXGXPXXXPPPPPXGGXGXXXXXPPPPXPPPXP 613
           P     G    P   P  P  G        PPP  PP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 679 PPPPXXGAPPPXXPXXXXPPXXP 747
           PP P  G PPP  P    P   P
Sbjct: 39  PPNPSQG-PPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 658 PXGGXXXPPPPXXGAPPPXXPXXXXPPXXPP 750
           P GG     PP  GAP P  P        PP
Sbjct: 404 PAGGQL---PPSAGAPMPPIPNMSNMSGMPP 431



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 655 PPXGGXXXPPPPXXGAPPPXXP 720
           PP      PP    GAPP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 585  PPPPPPP 605
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 585  PPPPPPP 605
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 352  PPPPPPXXXGG 384
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 734  PPXPPPPXXRG 766
            PP PPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 882 PPXPLXPPPPXPXXXP 929
           PP P  PPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 340 PFXXPPPPPPXXXG 381
           P   PPPPPP   G
Sbjct: 339 PKPAPPPPPPSSSG 352



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 584 PPPPXPPPXP 613
           PP P PPP P
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 875 PPXPXPPXXPP 907
           PP P PP  PP
Sbjct: 338 PPKPAPPPPPP 348


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 310 AAXPPVTRRXPFXXPPPPPP 369
           A   P + R P   PP PPP
Sbjct: 38  AMRDPRSNRGPVLFPPGPPP 57


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +2

Query: 590 PPXPPPXPXXXXXXXGGVXXPPPPXGGXPXPP 685
           P  PP  P            P    GG P PP
Sbjct: 104 PTAPPIPPEIQRALEWNAAHPEEDDGGQPRPP 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,370
Number of Sequences: 438
Number of extensions: 15250
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)