Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B20
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    36   0.006
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    30   0.50 
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    29   0.87 
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    29   1.2  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   4.7  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    27   4.7  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    26   8.1  

>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
 Frame = +1

Query: 214 GKSIFITGATGFMGKVLVEKLLKSCPGLN-KLYLLMRPKKGQSSKERLDDFLGFKLFGPL 390
           G+   +TGATG+ G+  +E L+K    LN  +  L+R    +++KERL       L   L
Sbjct: 644 GQYFLLTGATGYFGRRFLEYLVK----LNISVVCLVRESSDEAAKERL-----ISLVPSL 694

Query: 391 QKENPKCFEKLHVVPGDILMDDLGISIADRELIQRECQVIFHCAACVRFDMFLRDAVNLN 570
           +  +    E + V    +     G+  A  E +      I+H AA V +    ++    N
Sbjct: 695 RISS----ENIIVWAAHVEEIRFGLDDAKWEFLVENVSRIYHMAAEVHWMKSYQELRPAN 750

Query: 571 TAATKRVLELA 603
              TK VLEL+
Sbjct: 751 VLGTKTVLELS 761


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 211 AGKSIFITGATGFMGKVLVEKLLKS 285
           +GK + +TG TGF+G  + E+LL++
Sbjct: 2   SGKLVLVTGVTGFIGAHVAEQLLQA 26


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 223 IFITGATGFMGKVLVEKLLKS 285
           IF+TGA GF+G  +V +LL++
Sbjct: 3   IFVTGAAGFIGSEIVRQLLEA 23


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/80 (27%), Positives = 40/80 (50%)
 Frame = +1

Query: 295 LNKLYLLMRPKKGQSSKERLDDFLGFKLFGPLQKENPKCFEKLHVVPGDILMDDLGISIA 474
           L  L +++  KKG S+ +R+  FL       LQ+++P+  + +  +   IL    G+   
Sbjct: 38  LRALNIILTVKKGNSNADRVLRFL-VTFVNYLQQKDPE-IDIVQPILKHILR---GLDAK 92

Query: 475 DRELIQRECQVIFHCAACVR 534
           D+ +  R CQ+I     CV+
Sbjct: 93  DKTVRYRCCQIIARVVNCVK 112


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 583 KRVLELAKDFNNLEAFIHVSTSYCRCELDLLEEKLYPSPHRP-EHIMDCM 729
           K VL    DF   E++  + T  C    D+LE   +PS H P +H++  +
Sbjct: 295 KSVLLALSDFRQDESYCRICTQSCVTLPDILE--AFPSCHPPVDHLISAL 342


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 500 HSRCISSLSAIDMPKSSISMSPGTT*SFSKHF 405
           HS   +SL A   P  S  + PG    + KHF
Sbjct: 669 HSSTPASLQATKTPSPSFVLEPGIPQEYKKHF 700


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -2

Query: 452 SISMSPGTT*SFSKHFGFSFCSGPNNLNPRKSSNLSLLLCPFLGLINR*SLFKPGHDFNS 273
           S+ +SP T+ +  + F FS    P +L P  SSN           +N  +L +P    NS
Sbjct: 319 SLPISPSTSQNSVQPFPFSIQQPPLHLEPPLSSN----------TLNSSTLPQP----NS 364

Query: 272 FSTNTFPMKPVAP-VMKIDLP 213
              NTFP  P  P +   D+P
Sbjct: 365 TDFNTFPPLPSTPRISSEDIP 385


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 787 PNTYAYTKSLTEDLXSQFEGXFPI 858
           P  Y +T +L E +  +F G FP+
Sbjct: 79  PEEYPFTDNLPEPILPKFSGKFPL 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,821
Number of Sequences: 5004
Number of extensions: 71076
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)