Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B20
         (879 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)              167   8e-42
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)                  29   5.0  
SB_20186| Best HMM Match : hATC (HMM E-Value=0.14)                     29   6.6  
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)                29   6.6  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score =  167 bits (407), Expect = 8e-42
 Identities = 86/228 (37%), Positives = 133/228 (58%)
 Frame = +1

Query: 193 SVAEYYAGKSIFITGATGFMGKVLVEKLLKSCPGLNKLYLLMRPKKGQSSKERLDDFLGF 372
           S+  ++A K + ITG TGF+GKVL+EKLL+SC  +  +YLL R +   + ++R+D+ L  
Sbjct: 3   SIQTFFADKVVLITGGTGFLGKVLLEKLLRSCRTVKCIYLLTRSRADHTPQQRIDNMLQT 62

Query: 373 KLFGPLQKENPKCFEKLHVVPGDILMDDLGISIADRELIQRECQVIFHCAACVRFDMFLR 552
           +LF  +++ +P   +K+  + GDI   DLG+S  D  LI    Q++FH AA VRFD    
Sbjct: 63  RLFQNVRENDPDQLDKVTAITGDIAEADLGLSPEDMALIIGSVQIVFHSAATVRFDE--- 119

Query: 553 DAVNLNTAATKRVLELAKDFNNLEAFIHVSTSYCRCELDLLEEKLYPSPHRPEHIMDCMS 732
                         EL   F   +AF+HVS++Y  C+ D+++EK+YP    PE ++  + 
Sbjct: 120 --------------ELRVFFICPQAFVHVSSTYANCDRDVVDEKIYPPSIEPEKLISSLE 165

Query: 733 WMDDQLVAHMQPKLIEPQPNTYAYTKSLTEDLXSQFEGXFPITXARPS 876
           WM D +V  + P +I+ +PNTY +TKSL E +  Q     P++  RPS
Sbjct: 166 WMSDDMVKAITPYVIDQRPNTYTFTKSLAEHVLLQEASGLPVSIFRPS 213


>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +1

Query: 217 KSIFITGATGFMGKVLVEKLLKSCPGLNKLYLLMRPKKGQSSKERL----DDFLGFKLFG 384
           K++F+     +  K+ ++KL   C G+  +YL  +P K + +K  L    ++  GFK+  
Sbjct: 42  KTLFVINVPPYCTKLAIKKLFGKCGGVKSVYLHKQPGKVKETKTSLLNTDNEVKGFKVAY 101

Query: 385 PLQKENPKCFEKLHVVPGDILM 450
            + K+       L + P ++L+
Sbjct: 102 VVFKKPSSLDAALKLDPMEVLL 123


>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
          Length = 831

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 452 SISMSPGTT*SFSKHFGFSFCSGPNNLNPRKS 357
           ++S++ G +  FS HFG +FC  P+  + RKS
Sbjct: 762 TMSVAVGVSIDFSMHFGVAFCLAPDK-HDRKS 792


>SB_20186| Best HMM Match : hATC (HMM E-Value=0.14)
          Length = 709

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 481 LCLLLICPSHPSVCRPGQREVSRSTSG 401
           LC+  +C +  SVC  G+R+V R  +G
Sbjct: 271 LCVSRVCDASFSVCHQGKRDVDRHLAG 297


>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
          Length = 595

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 875 DGRAXVIGNXPSNCDXRSSVRDFVYAYVLGWGSINLGC 762
           DG        PS CD  SS   F+    + WG   LGC
Sbjct: 287 DGWRPQESTSPSKCDSSSSFLHFLKKKNISWGFDELGC 324


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 114  SHKYFTYFKHKTCDPLRDSRRXQKLKEXPSSGGSKE 7
            ++++F +F  K   P RDS+  QKL   P   G +E
Sbjct: 1374 AYQFFGHFFAKGSPPRRDSKDLQKLTGSPKKEGEEE 1409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,934,753
Number of Sequences: 59808
Number of extensions: 548902
Number of successful extensions: 1562
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)