Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_B19
(844 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 32 0.12
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 28 1.9
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 27 2.5
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 27 3.3
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 26 5.8
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2... 26 5.8
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 5.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.8
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 26 7.7
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 26 7.7
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 31.9 bits (69), Expect = 0.12
Identities = 33/105 (31%), Positives = 46/105 (43%)
Frame = +2
Query: 323 VSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVVEPLLLVLNLGTHGFYPFPGTFR 502
V+C F + + GF + KF A+ WAV E +LLV L F P P FR
Sbjct: 145 VNCQSTTKFIFGELPVFNSGFSVSSSDVKFRAVQWAVGEAILLVCVL--LNFIP-PKWFR 201
Query: 503 RQYNMYVEYTSIIAEPRCYPGILHVYLVDILNFLINLIWLRIVVS 637
Y+ S+ V +L+F++N+IWL I VS
Sbjct: 202 -----YIFRVSV--------------AVILLDFVLNMIWLPIAVS 227
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -1
Query: 430 RPGYSAEL-IVINVTLEAISDNSNCQQMKRYIQDTRHQMQISDDETYSA*FDSTAHAS 260
RP Y+ L I+ N +E M ++IQD + + D YS F H S
Sbjct: 252 RPAYAKTLEIIANKGIEPFYRGELTNSMVKFIQDNGGIVTVEDFGNYSTVFADALHTS 309
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +3
Query: 255 TSLACAVESNYALYVSSSLICIWCLVSWI*RFIC*QLLLSLMASSVTLITISSALY 422
TS A++ + L+ ++IC+ V W+ + L + +SV L + A+Y
Sbjct: 174 TSPYAAIQKAFPLFHKDAIICMMLSVIWLFCLVAIPRFLYFLLASVPLTMFAFAVY 229
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 736 VSEINDLHHDLYYGEAEEHS 677
++ NDL HD+YYG+ S
Sbjct: 83 INSYNDLFHDVYYGDGRSMS 102
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 640 IGHDNPQPNQINEKIED-VNQVYVENTGIASGLCDNRCVLN 521
I H+N +I EKIED VN +++ +SGL N LN
Sbjct: 296 IPHENDLTVKITEKIEDLVNCLFLPLYFASSGLKTNISTLN 336
>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 708 TFTMERLRNIRIGSGFLLY 652
TFT + L NIR G+G L Y
Sbjct: 132 TFTFKPLHNIRSGAGLLAY 150
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 119 FRKFLTGSLRCSTPPHEKPVRVITQNLKD 33
F+K++ L T P E+P RVI +++ D
Sbjct: 313 FKKYVEMYLASDTKPDEEPPRVIYEHVND 341
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 203 GELRAVLSIGNVLTMVLHVTSMCCGIKLRTICFVIAYLHLVSCVLDIAFHLLTVAIVTD 379
G +AVLS ++ +V SMCC +L + A L + S + I L + + TD
Sbjct: 187 GPGKAVLSDDSICEIVETGLSMCCQSRLSQVLRYSAELSMTSILEKIFERLKYIDVKTD 245
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 719 IIYFGYQPHFFHIXGNETYWFL 784
I YF HF H+ G WFL
Sbjct: 336 ITYFRQWRHFKHLLGTSVCWFL 357
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 528 THRLSQSPDAIPVFSTYTWLTS 593
++RLS PD IP S W T+
Sbjct: 604 SYRLSVIPDGIPAMSVEVWATN 625
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,683,513
Number of Sequences: 5004
Number of extensions: 83487
Number of successful extensions: 224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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