Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B18
         (908 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) ...    31   1.1  
At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-...    29   3.2  
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-...    29   3.2  

>At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 2)
           identical to SP|Q9T0P4 Ferredoxin-dependent glutamate
           synthase 2, chloroplast precursor (EC 1.4.7.1) (Fd-GOGAT
           2) {Arabidopsis thaliana}
          Length = 1629

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 793 AISCQHTKLLRVGINASASVNVRVHFCIVFGNSACGVX*ANAESVC-HVSLYHLRNWRIN 617
           A+   H  L++ G+  SAS+      C    + AC +    A ++C H++L   R WR++
Sbjct: 733 AVGAVHQHLIQNGLRMSASIIADTAQCFSTHHFACLIG-YGASAICPHLALETCRQWRLS 791

Query: 616 S 614
           +
Sbjct: 792 N 792


>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
           identical to ferredoxin-dependent glutamate synthase
           precursor [Arabidopsis thaliana] GI:3869251
          Length = 1648

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 793 AISCQHTKLLRVGINASASVNVRVHFCIVFGNSACGVX*ANAESVC-HVSLYHLRNWRIN 617
           A+   H  L++ G+  SAS+      C    + AC V    A +VC +++L   R WR++
Sbjct: 757 AVGAVHQHLIQNGLRMSASIVADTAQCFSTHHFACLVG-YGASAVCPYLALETCRQWRLS 815

Query: 616 S 614
           +
Sbjct: 816 N 816


>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
           ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
           identical to ferredoxin-dependent glutamate synthase
           precursor [Arabidopsis thaliana] GI:3869251
          Length = 1622

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 793 AISCQHTKLLRVGINASASVNVRVHFCIVFGNSACGVX*ANAESVC-HVSLYHLRNWRIN 617
           A+   H  L++ G+  SAS+      C    + AC V    A +VC +++L   R WR++
Sbjct: 731 AVGAVHQHLIQNGLRMSASIVADTAQCFSTHHFACLVG-YGASAVCPYLALETCRQWRLS 789

Query: 616 S 614
           +
Sbjct: 790 N 790


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,821,266
Number of Sequences: 28952
Number of extensions: 321027
Number of successful extensions: 656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)